Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_B21
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   153   8e-38
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    62   3e-10
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    29   2.9  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  153 bits (372), Expect = 8e-38
 Identities = 80/183 (43%), Positives = 112/183 (61%), Gaps = 1/183 (0%)
 Frame = +1

Query: 109 LKLAFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRGFTLREI 288
           +K  F+QPAR+ RR+QN                LR +VRCP  RY+TK R GRGF+L+E+
Sbjct: 22  IKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQEL 81

Query: 289 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANE 465
           +AAG++   ARTIGIAVD RR NK+ E L+ N  R+KEY+A+LILFP K     KG+++ 
Sbjct: 82  KAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSA 141

Query: 466 XXRKLATQLRGPLMPVQQPAPKSVARPITEXEKNFKAYQYLRGARSIAKLVGIRAKRLXD 645
              K+A QLRG ++P+         R +T+ E+  + ++ LR  R+  K  G R KR  +
Sbjct: 142 EELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKERADKKYRGKREKRARE 201

Query: 646 AAE 654
           AAE
Sbjct: 202 AAE 204


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 30/66 (45%), Positives = 40/66 (60%)
 Frame = +1

Query: 109 LKLAFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRGFTLREI 288
           +K  F+QPAR+ RR+QN                LR +VRCP  RY+TK R GRGF+L+E+
Sbjct: 22  IKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQEL 81

Query: 289 RAAGLN 306
           +AA  N
Sbjct: 82  KAAEEN 87


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 418  ILFPKGKKVLKGEANEXXRKLATQLRGPLMPVQQPAPKSVARPITEXEKNFK 573
            ++F   K VLK       +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
            F13B9.1b protein.
          Length = 1614

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 418  ILFPKGKKVLKGEANEXXRKLATQLRGPLMPVQQPAPKSVARPITEXEKNFK 573
            ++F   K VLK       +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 418  ILFPKGKKVLKGEANEXXRKLATQLRGPLMPVQQPAPKSVARPITEXEKNFK 573
            ++F   K VLK       +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 901  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,228,558
Number of Sequences: 27780
Number of extensions: 282578
Number of successful extensions: 564
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)