Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_B19
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    29   0.58 
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    27   3.1  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   3.1  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   7.2  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   7.2  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +3

Query: 45  RFHSANANRIKMFPLRRVVGNKILEQWRSQATAAVG--AKTQMKAYSTE-VTPRPL 203
           R +  N NR  +  L   V  K   QWRSQ    +   AKT  + + T+ +  RPL
Sbjct: 35  RKYDLNINRDSLQELASFVSKKCGSQWRSQCEPLLDEIAKTWKRVHETQPIVTRPL 90


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/58 (20%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +3

Query: 108 KILEQWRSQATAAVGAKTQMKAYSTEVTPRP-LTMLTEDELAMRETIRKLXTEQISPL 278
           +++ +W+      +    + +A    +T +P +T+  E+E  ++ET+ ++ +E+I P+
Sbjct: 670 QLISEWQKYRDEVIARVAEERA----ITGQPAITVPAEEEEIIQETVEEVISEEIEPV 723


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 54  SANANRIKMFP-LRRVVGN-KILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTM-LTEDE 224
           + NAN  ++ P L+  +   K+LEQ   +    V  + + K Y++    RPL+  +TE  
Sbjct: 439 NGNANPSRLNPALKNYMEELKLLEQQNKKRLLLVSQEKERKGYTSASPDRPLSQTITESS 498

Query: 225 LAMRETIRKLXTE 263
           +A  ++     T+
Sbjct: 499 VAKTKSTTPKSTD 511


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 125 EVPGNGCRWSKDSDESIQHRSYPTTFD 205
           +V GN  +  K SDE ++ R+ P TF+
Sbjct: 510 DVLGNAHKKFKGSDEVVESRAGPVTFE 536


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 394 KLQPEPLYSTGVSMPINP 341
           +LQPEPL+  GVS  + P
Sbjct: 702 ELQPEPLHYVGVSYGLTP 719


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,921
Number of Sequences: 5004
Number of extensions: 46683
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)