Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_B19
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.9  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 416 HHQHHCQEI 390
           HH HHC EI
Sbjct: 471 HHWHHCPEI 479


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 343 PLSNNICRIPSSMRCSXSIXFTSGLI 266
           P+  + C  P +  CS S  +T+G +
Sbjct: 158 PIPASCCNSPENNTCSISNSYTNGCV 183


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 83  PITTRCWQQDFR 118
           P+   CW +DFR
Sbjct: 387 PVIYACWSRDFR 398


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 191 GNFCAVCFHLSLCSNGSRC 135
           GN  +   H ++CSNG  C
Sbjct: 362 GNILSPSIHDNICSNGWIC 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,434
Number of Sequences: 438
Number of extensions: 3358
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)