Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_B18
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    96   3e-21
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    96   3e-21
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   8.0  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 95.9 bits (228), Expect = 3e-21
 Identities = 43/84 (51%), Positives = 59/84 (70%)
 Frame = +1

Query: 136 NWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEAL 315
           +W+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE +
Sbjct: 51  DWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKI 110

Query: 316 KLVEKVQDGGRILTTQXRRDLDRI 387
            ++EK  +GGR ++ Q +RDLDRI
Sbjct: 111 GVLEKSDNGGRRISQQGQRDLDRI 134


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 95.9 bits (228), Expect = 3e-21
 Identities = 43/84 (51%), Positives = 59/84 (70%)
 Frame = +1

Query: 136 NWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEAL 315
           +W+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE +
Sbjct: 51  DWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKI 110

Query: 316 KLVEKVQDGGRILTTQXRRDLDRI 387
            ++EK  +GGR ++ Q +RDLDRI
Sbjct: 111 GVLEKSDNGGRRISQQGQRDLDRI 134


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -1

Query: 375 VSSTLCGENATT----VLNFLNKLQCLQRLQSLAC 283
           VSS  C E   T     L+ +N ++C+  LQS+ C
Sbjct: 261 VSSKNCFEEPITPRFQALHRINMIECIPELQSVVC 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,685,373
Number of Sequences: 5004
Number of extensions: 30361
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)