Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_B18
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    99   8e-22
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    99   8e-22
Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical pr...    27   5.5  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =   99 bits (238), Expect = 8e-22
 Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 1/130 (0%)
 Frame = +1

Query: 1   KAVAQSKLVKTVAAHXKKNGQSQGX*AHGSCKXSSLQXAGSAMTLNWFYVRCAAILRHIY 180
           K V Q +  K++A   KK+G+ +        K   +    + +  +WFY R A++ RH+Y
Sbjct: 8   KDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLG-VNKELAPVDPDWFYTRAASLARHLY 66

Query: 181 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILT 357
            R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+
Sbjct: 67  FR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILS 125

Query: 358 TQXRRDLDRI 387
            Q R+DLDRI
Sbjct: 126 KQGRKDLDRI 135


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =   99 bits (238), Expect = 8e-22
 Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 1/130 (0%)
 Frame = +1

Query: 1   KAVAQSKLVKTVAAHXKKNGQSQGX*AHGSCKXSSLQXAGSAMTLNWFYVRCAAILRHIY 180
           K V Q +  K++A   KK+G+ +        K   +    + +  +WFY R A++ RH+Y
Sbjct: 8   KDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLG-VNKELAPVDPDWFYTRAASLARHLY 66

Query: 181 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILT 357
            R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL+
Sbjct: 67  FR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILS 125

Query: 358 TQXRRDLDRI 387
            Q R+DLDRI
Sbjct: 126 KQGRKDLDRI 135


>Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical
           protein C10C6.3 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +1

Query: 181 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTT 360
           I S +  K  T ++ G  R G  P      SGS  +K   +  A+K  EK +D GR L  
Sbjct: 141 IESDLKEKPDTNVYTG-SREGYVPPPAKEGSGSGGKKKDMNNVAVKPDEKKKDSGRKLKK 199

Query: 361 QXRRDLDRI 387
              + + ++
Sbjct: 200 TVSKTITKL 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,681,569
Number of Sequences: 27780
Number of extensions: 184561
Number of successful extensions: 432
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)