Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_B18
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.2  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 81  CSGTLTLPVF-FXVSSDSFNKLGLCNSL 1
           C G   L V  F + SDS  K+ LC+S+
Sbjct: 260 CVGITFLTVLVFYLPSDSGEKVSLCSSI 287


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 55  NGQSQGX*AHGSCKXSSLQXAGSAMTLNWFYVR 153
           NG+ +   AHG  +  +LQ AG    + +F VR
Sbjct: 419 NGEFEVEPAHGEDREEALQKAG---IVTYFIVR 448


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 191 LLE*RLSPRSLVGANVMELHLHISA 265
           LL+ RL+P S +  ++   H H+S+
Sbjct: 268 LLKARLNPNSSLQPSLASHHSHLSS 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,542
Number of Sequences: 438
Number of extensions: 2121
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)