Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_B14
(395 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29 pro... 71 1e-12
U49083-1|AAC50647.1| 159|Homo sapiens HIP protein. 71 1e-12
U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29 pro... 71 1e-12
BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29 p... 71 1e-12
BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29 p... 71 1e-12
BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29 p... 71 1e-12
BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29 p... 71 1e-12
BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29 p... 71 1e-12
AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA seq... 71 1e-12
Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II pro... 30 2.4
X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II prot... 30 2.4
U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein. 30 2.4
BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for IM... 30 2.4
AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta p... 30 2.4
AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II be... 30 2.4
AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, b... 30 2.4
>Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 71.3 bits (167), Expect = 1e-12
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +2
Query: 50 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFL 169
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFL
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFL 40
>U49083-1|AAC50647.1| 159|Homo sapiens HIP protein.
Length = 159
Score = 71.3 bits (167), Expect = 1e-12
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +2
Query: 50 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFL 169
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFL
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFL 40
>U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 71.3 bits (167), Expect = 1e-12
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +2
Query: 50 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFL 169
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFL
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFL 40
>BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29
protein.
Length = 161
Score = 71.3 bits (167), Expect = 1e-12
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +2
Query: 50 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFL 169
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFL
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFL 40
>BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 71.3 bits (167), Expect = 1e-12
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +2
Query: 50 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFL 169
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFL
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFL 40
>BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 71.3 bits (167), Expect = 1e-12
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +2
Query: 50 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFL 169
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFL
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFL 40
>BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 71.3 bits (167), Expect = 1e-12
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +2
Query: 50 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFL 169
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFL
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFL 40
>BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 71.3 bits (167), Expect = 1e-12
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +2
Query: 50 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFL 169
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFL
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFL 40
>AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA
sequence from clone RP11-632C17 on chromosome 6 Contains
the gene for a novel protein similar to ribosomal
protein L29 ).
Length = 172
Score = 71.3 bits (167), Expect = 1e-12
Identities = 31/40 (77%), Positives = 34/40 (85%)
Frame = +2
Query: 50 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFL 169
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFL
Sbjct: 16 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFL 55
>Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II protein.
Length = 1031
Score = 30.3 bits (65), Expect = 2.4
Identities = 21/86 (24%), Positives = 39/86 (45%)
Frame = +2
Query: 38 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLTESKVLQEG*PEASQA 217
K+ K + S+N ++N RK + KKP+KT + +D F ++ P +A
Sbjct: 950 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD-IFPSDFPTEPPSLPRTGRA 1008
Query: 218 TREGG*XKSYPXSKGQEMNIXYKQIN 295
+E K + S +E ++ + N
Sbjct: 1009 RKE---VKYFAESDEEEDDVDFAMFN 1031
>X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II protein.
Length = 1621
Score = 30.3 bits (65), Expect = 2.4
Identities = 21/86 (24%), Positives = 39/86 (45%)
Frame = +2
Query: 38 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLTESKVLQEG*PEASQA 217
K+ K + S+N ++N RK + KKP+KT + +D F ++ P +A
Sbjct: 1540 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD-IFPSDFPTEPPSLPRTGRA 1598
Query: 218 TREGG*XKSYPXSKGQEMNIXYKQIN 295
+E K + S +E ++ + N
Sbjct: 1599 RKE---VKYFTESDEEEDDVDFAMFN 1621
>U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein.
Length = 350
Score = 30.3 bits (65), Expect = 2.4
Identities = 21/86 (24%), Positives = 39/86 (45%)
Frame = +2
Query: 38 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLTESKVLQEG*PEASQA 217
K+ K + S+N ++N RK + KKP+KT + +D F ++ P +A
Sbjct: 269 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD-IFPSDFPTEPPSLPRTGRA 327
Query: 218 TREGG*XKSYPXSKGQEMNIXYKQIN 295
+E K + S +E ++ + N
Sbjct: 328 RKE---VKYFAESDEEEDDVDFAMFN 350
>BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for
IMAGE:4999541) protein.
Length = 485
Score = 30.3 bits (65), Expect = 2.4
Identities = 21/86 (24%), Positives = 39/86 (45%)
Frame = +2
Query: 38 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLTESKVLQEG*PEASQA 217
K+ K + S+N ++N RK + KKP+KT + +D F ++ P +A
Sbjct: 404 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD-IFPSDFPTEPPSLPRTGRA 462
Query: 218 TREGG*XKSYPXSKGQEMNIXYKQIN 295
+E K + S +E ++ + N
Sbjct: 463 RKE---VKYFAESDEEEDDVDFAMFN 485
>AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta
protein.
Length = 717
Score = 30.3 bits (65), Expect = 2.4
Identities = 21/86 (24%), Positives = 39/86 (45%)
Frame = +2
Query: 38 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLTESKVLQEG*PEASQA 217
K+ K + S+N ++N RK + KKP+KT + +D F ++ P +A
Sbjct: 636 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD-IFPSDFPTEPPSLPRTGRA 694
Query: 218 TREGG*XKSYPXSKGQEMNIXYKQIN 295
+E K + S +E ++ + N
Sbjct: 695 RKE---VKYFAESDEEEDDVHFAMFN 717
>AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II beta
protein.
Length = 1598
Score = 30.3 bits (65), Expect = 2.4
Identities = 21/86 (24%), Positives = 39/86 (45%)
Frame = +2
Query: 38 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLTESKVLQEG*PEASQA 217
K+ K + S+N ++N RK + KKP+KT + +D F ++ P +A
Sbjct: 1517 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD-IFPSDFPTEPPSLPRTGRA 1575
Query: 218 TREGG*XKSYPXSKGQEMNIXYKQIN 295
+E K + S +E ++ + N
Sbjct: 1576 RKE---VKYFAESDEEEDDVDFAMFN 1598
>AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, beta
isozyme variant protein.
Length = 1009
Score = 30.3 bits (65), Expect = 2.4
Identities = 21/86 (24%), Positives = 39/86 (45%)
Frame = +2
Query: 38 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLTESKVLQEG*PEASQA 217
K+ K + S+N ++N RK + KKP+KT + +D F ++ P +A
Sbjct: 928 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD-IFPSDFPTEPPSLPRTGRA 986
Query: 218 TREGG*XKSYPXSKGQEMNIXYKQIN 295
+E K + S +E ++ + N
Sbjct: 987 RKE---VKYFAESDEEEDDVDFAMFN 1009
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,759,339
Number of Sequences: 237096
Number of extensions: 670073
Number of successful extensions: 1577
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1577
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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