Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_B14
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   0.73 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    20   9.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   9.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     20   9.0  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 0.73
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +2

Query: 56  KSKNHTNHNQNRKAHRNGIKKPRKTRH 136
           +  NH NHN N+  H +        +H
Sbjct: 420 QDNNHYNHNHNQARHSSKSDNQNNNQH 446


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 125 KTRHESTLGMDPKFLTESK 181
           + RH STL +D K LT  K
Sbjct: 239 ENRHSSTLDIDHKMLTPIK 257


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 307 IWLCVYLLIXNVHF 266
           I +CV +++ NVHF
Sbjct: 320 ISICVTVVVLNVHF 333


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 307 IWLCVYLLIXNVHF 266
           I +CV +++ NVHF
Sbjct: 320 ISICVTVVVLNVHF 333


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 301 LCVYLLIXNVHF 266
           +CV +++ NVHF
Sbjct: 318 ICVTVVVLNVHF 329


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 128 TRHESTLGMDPKFLTESKV 184
           T HE++   + KF T SKV
Sbjct: 35  TSHEASAPAEGKFKTVSKV 53


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 128 TRHESTLGMDPKFLTESKVLQE 193
           T H     +  + L E+K++QE
Sbjct: 427 TEHSQLTNISEEVLKEAKIIQE 448


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 128 TRHESTLGMDPKFLTESKVLQE 193
           T H     +  + L E+K++QE
Sbjct: 133 TEHSQLTNISEEVLKEAKIIQE 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,341
Number of Sequences: 438
Number of extensions: 1421
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)