Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_B08
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 160 1e-40
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 138 7e-34
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 77 2e-15
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 62 7e-11
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 38 0.002
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 34 0.016
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 33 0.048
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 33 0.048
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 32 0.063
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 31 0.11
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 31 0.15
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 31 0.19
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 30 0.26
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 27 1.8
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 1.8
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 27 3.1
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 4.2
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 5.5
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 25 7.3
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 7.3
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 25 9.6
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 25 9.6
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 25 9.6
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 9.6
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 160 bits (389), Expect = 1e-40
Identities = 74/87 (85%), Positives = 78/87 (89%)
Frame = +1
Query: 103 MGNMFANLFKGLFGKKEMXILMVGLDAAGKTTILYKLKLXEIVTTIPTIGFNVETVXYKN 282
MG + LF+ LFGK+EM ILMVGLDAAGKTTILYKLKL EIVTTIPTIGFNVETV Y+N
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 283 IXFTVWDVGGQDKIRPLWRHYFQNTQG 363
I FTVWDVGGQDKIRPLWRHYFQNTQG
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQG 87
Score = 136 bits (329), Expect = 3e-33
Identities = 65/94 (69%), Positives = 71/94 (75%)
Frame = +2
Query: 359 RALIFVVXSNDRERIGEAXXXXXXXXXXXXXXDAVLLIFANKQDLPNAMNAAXITDKLGL 538
+ +IFVV SNDRERI EA DA+LL+FANKQDLPNAMNAA ITDKLGL
Sbjct: 86 QGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGL 145
Query: 539 HSLRNRNWYIQATCATSGXGLYXGLDWLSNQLKN 640
HSLR+R WYIQATCATSG GLY GL+WLS LKN
Sbjct: 146 HSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 138 bits (334), Expect = 7e-34
Identities = 63/83 (75%), Positives = 68/83 (81%)
Frame = +1
Query: 115 FANLFKGLFGKKEMXILMVGLDAAGKTTILYKLKLXEIVTTIPTIGFNVETVXYKNIXFT 294
F+ F LF KEM ILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFN 68
Query: 295 VWDVGGQDKIRPLWRHYFQNTQG 363
VWDVGGQDKIRPLWRHYF T+G
Sbjct: 69 VWDVGGQDKIRPLWRHYFTGTKG 91
Score = 85.8 bits (203), Expect = 5e-18
Identities = 44/93 (47%), Positives = 53/93 (56%)
Frame = +2
Query: 359 RALIFVVXSNDRERIGEAXXXXXXXXXXXXXXDAVLLIFANKQDLPNAMNAAXITDKLGL 538
+ LIFVV S D RI EA D +LL+ ANKQDLP A++ A ITD L L
Sbjct: 90 KGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQL 149
Query: 539 HSLRNRNWYIQATCATSGXGLYXGLDWLSNQLK 637
L++R W +Q TCA +G GL GL WLS K
Sbjct: 150 DKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 77.0 bits (181), Expect = 2e-15
Identities = 30/72 (41%), Positives = 50/72 (69%)
Frame = +1
Query: 145 KKEMXILMVGLDAAGKTTILYKLKLXEIVTTIPTIGFNVETVXYKNIXFTVWDVGGQDKI 324
++E+ +L++GLD AGKTTIL L ++ PT GF + T+ + + FT+WD+GGQ +
Sbjct: 14 EREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTL 73
Query: 325 RPLWRHYFQNTQ 360
R W++YF++T+
Sbjct: 74 RNFWKNYFESTE 85
Score = 46.8 bits (106), Expect = 3e-06
Identities = 25/92 (27%), Positives = 44/92 (47%)
Frame = +2
Query: 362 ALIFVVXSNDRERIGEAXXXXXXXXXXXXXXDAVLLIFANKQDLPNAMNAAXITDKLGLH 541
A+I+VV S D R+ E +L+ ANK D+ A+++ I+ L +
Sbjct: 86 AIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNIS 145
Query: 542 SLRNRNWYIQATCATSGXGLYXGLDWLSNQLK 637
++ +W I + A +G + + WL+N LK
Sbjct: 146 KYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 62.1 bits (144), Expect = 7e-11
Identities = 29/72 (40%), Positives = 40/72 (55%)
Frame = +1
Query: 148 KEMXILMVGLDAAGKTTILYKLKLXEIVTTIPTIGFNVETVXYKNIXFTVWDVGGQDKIR 327
K +L +GLD AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 328 PLWRHYFQNTQG 363
LWR YF G
Sbjct: 79 RLWRDYFPEVNG 90
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +2
Query: 365 LIFVVXSNDRERIGEAXXXXXXXXXXXXXXDAVLLIFANKQDLPNAMNAAXITDKLGLH 541
++++V D ER+ E+ LI NK D P A++ + LGL+
Sbjct: 91 IVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISEDELKAALGLY 149
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 160 ILMVGLDAAGKTTILYKLKLXEIVTT-IPTIG--FNVETVXY--KNIXFTVWDVGGQDKI 324
+L++G GK+ +L + + I TIG F + T+ K I +WD GQ++
Sbjct: 12 LLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 71
Query: 325 RPLWRHYFQNTQG 363
R + Y++ G
Sbjct: 72 RTITTAYYRGAMG 84
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 34.3 bits (75), Expect = 0.016
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +1
Query: 160 ILMVGLDAAGKTTILYKLKLXEIVTT-IPTIG--FNVETVXY--KNIXFTVWDVGGQDKI 324
+L++G GK+ +L + + I TIG F + T K + +WD GQ++
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERF 70
Query: 325 RPLWRHYFQNTQG 363
R + Y++ G
Sbjct: 71 RTITSSYYRGAHG 83
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 32.7 bits (71), Expect = 0.048
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +1
Query: 160 ILMVGLDAAGKTTILYKLKLXEIVTT-IPTIGFNVETVXYKN----IXFTVWDVGGQDKI 324
+++VG GKTT + + E I T+G V + + I F VWD GQ+K+
Sbjct: 12 LVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKL 71
Query: 325 RPLWRHYF 348
L Y+
Sbjct: 72 GGLRDGYY 79
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 32.7 bits (71), Expect = 0.048
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 277 KNIXFTVWDVGGQDKIRPLWRHYFQNTQGSNL 372
K I +WD GQ+K R + R+Y++ G+ L
Sbjct: 60 KRIKLQIWDTAGQEKFRSVARNYYRGAAGAVL 91
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 32.3 bits (70), Expect = 0.063
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +1
Query: 163 LMVGLDAAGKTTILYKLKLXEI-VTTIPTIGFNVET----VXYKNIXFTVWDVGGQDKIR 327
+++G GK+ +L + E + + TIG T + K I +WD GQ++ R
Sbjct: 14 VLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYR 73
Query: 328 PLWRHYFQNTQGS 366
+ Y++ G+
Sbjct: 74 AITSAYYRGAVGA 86
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 238 IPTIGFNVETVXYKNIXFTVWDVGGQDKIRPLWRHYFQN 354
I T G + ET + +DVGGQ R W H F+N
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFEN 257
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +1
Query: 142 GKKEMXILMVGLDAAGKTTILYKLKL 219
G ++ +L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 31.1 bits (67), Expect = 0.15
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +1
Query: 139 FGKKEMXILMVGLDAAGKTTILYKLKLXEIVTTIP-TIGFN-VETVXY---KNIXFTVWD 303
F ++ ++ +G + GKT+++ + + T TIG + + Y + + +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 304 VGGQDKIRPLWRHYFQNT 357
GQ++ R L Y +++
Sbjct: 67 TAGQERFRSLIPSYIRDS 84
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 30.7 bits (66), Expect = 0.19
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Frame = +1
Query: 160 ILMVGLDAAGKTTILYKLKLXEIVTT-IPTIGFNVET---VXYKNIXFTVWDVGGQ---D 318
+++VG A GKT++L L T +PT+ N + V K++ +WD GQ +
Sbjct: 11 LVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYE 70
Query: 319 KIRPL 333
++RP+
Sbjct: 71 RLRPM 75
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 30.3 bits (65), Expect = 0.26
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +1
Query: 166 MVGLDAAGKTTILYKL---KLXEIVTTIPTIGFNVETVXYKN--IXFTVWDVGGQ 315
M+G + GKT+++ E T + F +T+ +N I F++WD+GGQ
Sbjct: 15 MIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQ 69
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -2
Query: 269 TVSTLKPIVGIVVTISXNLSLYRIVVLPAASKPTINIXISFLPKRPLNKFANIFPILNYY 90
T T++P V + ++S N +L VVL + + +IN+ L ++ FA +FPI Y
Sbjct: 191 TTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL--FAVHWFA-LFPIFRKY 247
Query: 89 EYNF 78
+ F
Sbjct: 248 IHVF 251
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 430 PHELFACLADTFPIVTVY-YED*SPVYFGNNAST 332
P E+ +CL+ PI ++ Y+D P YFG+ T
Sbjct: 288 PQEILSCLSQ-IPIKFIFFYQDVRPPYFGSYTKT 320
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 145 KKEMXILMVGLDAAGKTTILYKLKLXEIVTTIPTI 249
KK + ++G +GKT++ +L E TT+P+I
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSI 69
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 160 ILMVGLDAAGKTTILYKLKL 219
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 124 LFKGLFGKKEMXILMVGLDAAGKTTI 201
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 244 TIGFNVETVXYKNIXFTVWDVGGQDKIRPLWRHYFQN 354
T+G + + ++ ++DVGGQ R W + F+N
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFEN 215
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 145 KKEMXILMVGLDAAGKTTILYKLKLXEIVTTIPTIG 252
KK++ + ++G AGK++I+ L+ ++ P G
Sbjct: 308 KKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPG 343
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 378 TTKIRALCILEIMPPQWSDFVLASNIPHSK 289
T ++ A C+ + P W D + ++IPH+K
Sbjct: 311 TREVSAFCVTDA--PLWMDGSVDNDIPHAK 338
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Frame = +1
Query: 160 ILMVGLDAAGKTTILYKLKLXEIVT-TIPTIG--FNVETVXYK---NIXFTVWDVGGQDK 321
++++G A GK++++ + + TIG F +T+ ++ +WD GQ++
Sbjct: 17 LVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQER 76
Query: 322 IRPLWRHYFQN 354
+ L Y++N
Sbjct: 77 YKSLAPMYYRN 87
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 145 KKEMXILMVGLDAAGKTTILYKL 213
KK I++VG+ +GKTT + +L
Sbjct: 6 KKPCAIIVVGMAGSGKTTFMQQL 28
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 609 PSYSPXPEVAHVAWMYQL 556
P+ SP PEV+H W+ L
Sbjct: 16 PNSSPDPEVSHKLWVSSL 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,948
Number of Sequences: 5004
Number of extensions: 47336
Number of successful extensions: 152
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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