Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_B05
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   264   8e-72
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    28   1.3  
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    27   1.8  
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    27   1.8  
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    27   1.8  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   7.2  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   9.5  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  264 bits (647), Expect = 8e-72
 Identities = 126/169 (74%), Positives = 143/169 (84%)
 Frame = +1

Query: 100 EFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 279
           EF TREL+E+GYSG EVRVTP RSEIII AT TQ VLGEKGRRIRELT++VQKRF   E 
Sbjct: 25  EFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFKFAEN 84

Query: 280 SVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 459
           +V LYAEKV  RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+GCEVV+SGKL
Sbjct: 85  TVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKL 144

Query: 460 RGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLXIKVKIMLP 606
           R  RAKSMKF  G MIHSG P  D++++ATRHVLL QGVL +KVKIMLP
Sbjct: 145 RAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP 193



 Score = 28.7 bits (61), Expect = 0.77
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = +2

Query: 32 AVNNISKKRKFVGDGVF 82
          A   ISKKRKFV DGVF
Sbjct: 3  AAFTISKKRKFVADGVF 19


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +2

Query: 110 LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDAESVSSLP 247
           L S+P     AW+   LPS R+  L P      P  R+  ++K A  +SS+P
Sbjct: 8   LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVP 59


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 303 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 407
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 303 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 407
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 303 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 407
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 184 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAI-AQAESLRYKL 360
           MATR Q       RR  E  + +QK +N     V +  E+V   G   +  + +  RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWN--RNKVNMELERVRNEGTKLLQGKKQRRRYSI 783

Query: 361 IG 366
           +G
Sbjct: 784 LG 785


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 400  LRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRH 555
            + F ME   +  + ++  +L+     S K    ++I  GD  ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,693
Number of Sequences: 5004
Number of extensions: 50498
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)