Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_B05
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 297 5e-81
08_02_0818 - 21524539-21524664,21524911-21524961,21525800-215261... 29 2.4
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 3.2
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 4.2
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 28 5.6
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 28 7.4
08_01_0346 - 3063440-3064189 28 7.4
05_05_0212 + 23297636-23297970,23298260-23298734 28 7.4
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 27 9.8
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 297 bits (729), Expect = 5e-81
Identities = 145/178 (81%), Positives = 156/178 (87%)
Frame = +1
Query: 100 EFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 279
E LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGRRIRELTSVVQKRFN PE
Sbjct: 25 EMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPEN 84
Query: 280 SVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 459
V LYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKL
Sbjct: 85 GVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKL 144
Query: 460 RGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLXIKVKIMLPWDQQGKNGP 633
R QRAKSMKF G MI SG P N Y+++A RHVLL QGVL IKVKIML WD +GK GP
Sbjct: 145 RAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGP 202
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +2
Query: 44 ISKKRKFVGDGVF 82
ISKKRKFV DGVF
Sbjct: 7 ISKKRKFVADGVF 19
>08_02_0818 -
21524539-21524664,21524911-21524961,21525800-21526170,
21526497-21526852,21527926-21527996
Length = 324
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/79 (31%), Positives = 33/79 (41%)
Frame = +1
Query: 49 KEAKICWRWGFQRQNSTEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 228
+E K W WG Q + + L REL E+G IR E+I Q L K +R
Sbjct: 142 RETKQRWGWGVSVQVTMDALRRELWEEG----------IRQEVIAAEIAEQRELEAKVQR 191
Query: 229 IRELTSVVQKRFNIPEQSV 285
L V R ++ Q V
Sbjct: 192 DTGLLCDVPSRLSVSFQPV 210
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -1
Query: 487 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 383
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 107 SLGSWPRTAT-PAWKCGSLPSARRSLLWPPGHRVCS 211
++ SWPR P W C S RR L P R C+
Sbjct: 10 AVSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCA 45
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/76 (21%), Positives = 34/76 (44%)
Frame = -2
Query: 576 YSLXEKHMSGSSVDVIIARVSRVDHESXYKLH*FGTLTTQLARYNNFTTTGTRFHDETEN 397
+ L + + GS +++ V R D ++ Y+ G ++ +NN +++G HD N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798
Query: 396 TIASTTYSETSDKLVS 349
I ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 517 LQSGS*VHXQTSLIWHVDHAACQIQQLHNHGH 422
+QSG+ LIWH+ + C+I+ H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 337 AESLRYKLIGGLAVRRACYGVLR 405
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_05_0212 + 23297636-23297970,23298260-23298734
Length = 269
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 5 FFSAPVAIMAVNNISKKRKFVGDGVFNGRTQLSSS 109
++ P+AI A+N+ ++K+ + + F+G T SS
Sbjct: 155 WYKKPIAISALNSETRKKSCISEAPFSGPTTRISS 189
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 303 GGYSWPLRYRPG-RISKIQAYRRSRCTSCLLWC 398
G SW RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,743,900
Number of Sequences: 37544
Number of extensions: 363597
Number of successful extensions: 964
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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