Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_B02
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 186 3e-48
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 118 7e-28
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 96 5e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 91 1e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 74 2e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 6e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 56 6e-09
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 29 0.44
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 28 1.4
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 28 1.4
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 27 3.1
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 26 4.1
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 4.1
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom... 26 5.5
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 25 7.2
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 7.2
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 7.2
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 25 9.5
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 9.5
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 9.5
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 186 bits (452), Expect = 3e-48
Identities = 92/173 (53%), Positives = 120/173 (69%), Gaps = 16/173 (9%)
Frame = +1
Query: 121 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKET-AKVGDQSTRRMT-------------KA 258
++D GTGY+KLG+AGN P ++ P+ IA + A G + + + +A
Sbjct: 9 IMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRA 68
Query: 259 VEDLDFFIGDEAFE--ATGYSVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLM 432
EDLDFFIG++A + + GYS+ YP+RHG +++WD MER+ +Q +FKYLR EPEDH+FL+
Sbjct: 69 TEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLL 128
Query: 433 TEPPLNTPENRXYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTG 591
TEPPLN PENR AEIMFESFN GLYIAVQAVLALAASW S +R+ TG
Sbjct: 129 TEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTG 181
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGYV 653
+GDGVTHI+PVAEGYV
Sbjct: 186 SGDGVTHIIPVAEGYV 201
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 118 bits (284), Expect = 7e-28
Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Frame = +1
Query: 97 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 276
M + + A VID G+G K GFAG+ P+ + PS VG + + D
Sbjct: 1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHHGIMVGMGQKDS 52
Query: 277 FIGDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNT 453
++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 53 YVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNP 112
Query: 454 PENRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
NR + +I+FE+FN P Y+A+QAVL+L AS ++
Sbjct: 113 KSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRT 148
Score = 30.3 bits (65), Expect = 0.25
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ EGY
Sbjct: 155 SGDGVTHTVPIYEGY 169
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 95.9 bits (228), Expect = 5e-21
Identities = 51/144 (35%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Frame = +1
Query: 121 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 300
V+D GTG+ K+G+A + P+F PS + + + ++ T V+ D +GDEA
Sbjct: 7 VLDNGTGFVKVGYAKDNFPRFQFPSIVG-RPILRAEEK-----TGNVQIKDVMVGDEAEA 60
Query: 301 ATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENRXYLA 477
VKYP+ +GI++D++ M + + F+ L+ +P L+TEPP+N NR +
Sbjct: 61 VRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMC 120
Query: 478 EIMFESFNVPGLYIAVQAVLALAA 549
E MFE + G+Y+A+QAVL+L A
Sbjct: 121 ETMFERYGFGGVYVAIQAVLSLYA 144
Score = 28.7 bits (61), Expect = 0.77
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGYV 653
+GDGVTHIVPV E V
Sbjct: 155 SGDGVTHIVPVYESVV 170
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 91.1 bits (216), Expect = 1e-19
Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
D+ P C ID G+G+ K GFAG+ P+ + P+ + + +V S ++ D F+
Sbjct: 8 DNQPIC-IDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQK--------DMFV 58
Query: 283 GDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVF--KYLRAEPEDHHFLMTEPPLNT 453
G EA G ++ P+ GI+Q+W ME I ++ + L PE+H L+TEPPL
Sbjct: 59 GSEAQNLRGLLKIQRPIERGIIQNWSDMEE-IWSYIYSDQQLNTLPEEHPLLLTEPPLAN 117
Query: 454 PENRXYLAEIMFESFNVPGLYIAVQAVLALAAS 552
N+ +AE +E+ NVP L ++Q VLAL AS
Sbjct: 118 IRNKEKIAEYFYETLNVPALSFSLQPVLALYAS 150
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 609 GDGVTHIVPVAEGY 650
GDG+TH VP+ +G+
Sbjct: 161 GDGLTHSVPIYDGF 174
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 73.7 bits (173), Expect = 2e-14
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 2/155 (1%)
Frame = +1
Query: 100 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFF 279
GD + A VID G+ +T++GF+G P+ ++PS G+ S R
Sbjct: 8 GDEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYC--------GEFSDGRR---------L 50
Query: 280 IGDEAFEAT--GYSVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNT 453
G+E + G +K +R+G V++WD+ + + L+ P +H L+TEP N
Sbjct: 51 FGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNP 110
Query: 454 PENRXYLAEIMFESFNVPGLYIAVQAVLALAASWK 558
PENR E MFES P Y+A Q A AS K
Sbjct: 111 PENRVKTLETMFESLRCPATYLAKQETCAAFASGK 145
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 72.1 bits (169), Expect = 6e-14
Identities = 45/153 (29%), Positives = 73/153 (47%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
+ +P+ VID G+ +T+ G+AG + P I+PS ++ T R V++L
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDV------TGRNKYVVDELQIHA 61
Query: 283 GDEAFEATGYSVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPEN 462
G VK +GI+QDW+ E+ + + L+ P ++ ++TEP N
Sbjct: 62 -----PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSV 116
Query: 463 RXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
R + E FE +VP Y+ QAV A+ KS
Sbjct: 117 RQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKS 149
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 55.6 bits (128), Expect = 6e-09
Identities = 35/150 (23%), Positives = 67/150 (44%)
Frame = +1
Query: 121 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 300
VID G+ + G+ G K+P+ + + ++ K+ +R T D +G +
Sbjct: 28 VIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKL----SRTSTLVGNDTLIEVGSRSI- 82
Query: 301 ATGYSVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENRXYLAE 480
+ P ++ +WDLME+ ++ K L + +H MTEP N R + E
Sbjct: 83 -----ARSPFERNVISNWDLMEQVLDYTFLK-LGIDRMEHPICMTEPLANPTYVRSTMTE 136
Query: 481 IMFESFNVPGLYIAVQAVLALAASWKSRTS 570
++FE +N P + + + + + K +S
Sbjct: 137 LLFELYNAPSVAYGIDGLFSFYHNTKPSSS 166
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 29.5 bits (63), Expect = 0.44
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 488 LSHLMCQAFTLLYKPFLLWLRHGS 559
++ L+C + L+ KPF+LW RH +
Sbjct: 627 IAALICVPWLLIVKPFVLWRRHSN 650
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/88 (20%), Positives = 35/88 (39%)
Frame = +1
Query: 166 NKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVKYPVRHGIV 345
N +P I + E+ + + ++ K +E F+G AF+ G + +
Sbjct: 149 NHQPAVSIEESKEAVESTSQSSEISFKLIKVIEGHHTFVGGLAFDPMGQFLASQSFDHTL 208
Query: 346 QDWDLMERYIEQCVFKYLRAEPEDHHFL 429
+ W L +E+ + K P + FL
Sbjct: 209 KVWKLSTFGVEKSIAKPFEQMPTGNRFL 236
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 215 VSFIAMVDGIINCGSLLPAKPSLVYPVPTSI-TQAGKWSP 99
V+F M+ +I+C +++ AKPSL PV + G W+P
Sbjct: 2278 VAFTLMLAQVISCITIMIAKPSL--PVSDRVFPNLGAWNP 2315
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/88 (25%), Positives = 34/88 (38%)
Frame = +1
Query: 238 TRRMTKAVEDLDFFIGDEAFEATGYSVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPED 417
T K +E LD E + + VK + + L RY VF + + E E
Sbjct: 326 TENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEI 385
Query: 418 HHFLMTEPPLNTPENRXYLAEIMFESFN 501
+ + LN EN+ + EI + N
Sbjct: 386 NAHQFGKLDLNDTENKELVTEIFDSAIN 413
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 26.2 bits (55), Expect = 4.1
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Frame = +1
Query: 121 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKA-VEDLDFFIGDEAF 297
V+D G + K GFAG K + IP+ + +K G++ A D A
Sbjct: 9 VLDNGAYHIKAGFAGGKVVE--IPNCLT---RSKDGNRLFLGNELANCNDFTTLQFRRAH 63
Query: 298 EATGYSVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENRXYLA 477
E GY V + + WDL+ R + + D+ L+T+P P
Sbjct: 64 EK-GYLVHWSTETAV---WDLVMRNVG-----VMEPSMADYSLLLTQPVFTMPSIEHNTI 114
Query: 478 EIMFESF 498
+++FE F
Sbjct: 115 QLVFEEF 121
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 418 HHFLMTEPPLNTPENRXYLAEIMFESFNVPGL 513
H FL+T TP+ L I+F PGL
Sbjct: 618 HSFLLTYKTFTTPQELFTLLVILFHELPPPGL 649
>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 421 HFLMTEPPLNTPENRXYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSA 573
+F + L+ P R YL ++ I+V +L L WKS TSA
Sbjct: 109 YFTPAQAFLSQPIIRQYLTLLLICLVETTVYQISVVLLLCLTMGWKSWTSA 159
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 245 LRVL*SPTFAVSFIAMVDGII-NCGSLLPAKPSLVY 141
++++ S F + F+A + ++ N GSL+ AKP + Y
Sbjct: 191 IKLIDSKDFVLGFLAGLSVLLLNTGSLITAKPLISY 226
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -3
Query: 574 QQTYVTSMTQPKQERLVQQC 515
Q T +++MT KQE+++++C
Sbjct: 415 QSTSISAMTSEKQEQILREC 434
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 7.2
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Frame = +1
Query: 166 NKEPQFIIPSTIAIKETAKV-GDQSTRRMTKAVEDLDFFIGDEAFEATGYSVKYPVRHGI 342
N P F S K+ D+ ++ +K + F+G+ + G+ + +RHG
Sbjct: 374 NHPPSFDERSCFTSKQNPDTTSDRCRQQESKDNGNRTVFLGNLHTKTKGHEICDLIRHGG 433
Query: 343 VQDWD-LMERYIEQCVFKYLRAEPEDHHFLMTEPPL 447
+QD+ + E++I F A H +L E L
Sbjct: 434 LQDFHYIPEKHICFVTFITYSAANAFHDYLAEEEVL 469
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -1
Query: 387 HALFDVPFH*IPVLYDTVAHRILYRVS 307
H ++PF +P++ +I+YR+S
Sbjct: 293 HENINIPFRIVPIVEQLSKQKIIYRIS 319
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -1
Query: 285 TDEKIQIFDSLSHPPSTLIANFCSFFYRYG*WNNKLWFLVTGKTQFSIPGADIDNTS 115
TDE + DSLSHP +++ G NN + T +T+ +D TS
Sbjct: 271 TDESASLEDSLSHPTKSILDQLADKMEVDG-LNNNSNYSATPRTRVVNGQIVLDETS 326
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 271 DFFIGDEAFEATGYSVKYPVRHGI-VQDWDLMERYIEQC 384
D F+G + +EA V +P +G+ ++L Y++ C
Sbjct: 683 DVFVGYKYYEAVEREVLFPFGYGLSYTTFELSNLYLKNC 721
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,961
Number of Sequences: 5004
Number of extensions: 54483
Number of successful extensions: 154
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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