Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_B02
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 130 1e-30
SB_56| Best HMM Match : Actin (HMM E-Value=0) 120 8e-28
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 1e-27
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 1e-27
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 1e-27
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 119 2e-27
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 8e-21
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 1e-15
SB_54| Best HMM Match : Actin (HMM E-Value=0) 64 7e-11
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 64 9e-11
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 56 3e-08
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 55 4e-08
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 38 0.005
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 33 0.15
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 29 2.5
SB_32741| Best HMM Match : Filament (HMM E-Value=0.39) 29 3.3
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_15553| Best HMM Match : SCP (HMM E-Value=1.1e-16) 28 7.6
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 130 bits (313), Expect = 1e-30
Identities = 59/95 (62%), Positives = 72/95 (75%)
Frame = +1
Query: 148 KLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVKYP 327
K G+ K Q TIAIKE+AKVG++S R K VEDLDFFIGDEA + Y+ K+P
Sbjct: 242 KRGYDLAKAVQSNTQGTIAIKESAKVGNKSLGRSAKGVEDLDFFIGDEAIDKPSYATKWP 301
Query: 328 VRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLM 432
+RH IV+DWDLMER+ EQC+FKYLRAEPEDH+FL+
Sbjct: 302 IRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 120 bits (290), Expect = 8e-28
Identities = 63/156 (40%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Frame = +1
Query: 97 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 276
M D + A V+D G+G K GFAG+ P+ + PS VG + + + D
Sbjct: 1 MEDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDS 52
Query: 277 FIGDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNT 453
++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 53 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 112
Query: 454 PENRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
NR + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 113 KANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT 148
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ EGY
Sbjct: 155 SGDGVTHTVPIYEGY 169
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 120 bits (289), Expect = 1e-27
Identities = 63/156 (40%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Frame = +1
Query: 97 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 276
M D + A V+D G+G K GFAG+ P+ + PS VG + + + D
Sbjct: 1 MEDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDS 52
Query: 277 FIGDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNT 453
++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 53 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 112
Query: 454 PENRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
NR + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 113 KANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT 148
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ EGY
Sbjct: 155 SGDGVTHTVPIYEGY 169
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 120 bits (288), Expect = 1e-27
Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEIAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 283 GDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 459
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 460 NRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
NR + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 116 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT 149
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ EGY
Sbjct: 156 SGDGVTHTVPIYEGY 170
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 120 bits (288), Expect = 1e-27
Identities = 63/154 (40%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
D + A VID G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DDIAALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 283 GDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 459
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 460 NRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
NR + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 116 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT 149
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 119 bits (286), Expect = 2e-27
Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 283 GDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 459
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 460 NRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
NR + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 116 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT 149
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ EGY
Sbjct: 156 SGDGVTHTVPIYEGY 170
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 97.5 bits (232), Expect = 8e-21
Identities = 58/149 (38%), Positives = 85/149 (57%), Gaps = 6/149 (4%)
Frame = +1
Query: 121 VIDVGTGYTKLGFAGNKEPQFIIPSTIA---IKETAKVGDQSTRRMTKAVEDLDFFIGDE 291
V D GTG+ K G+AG+ P I PS + I+ + KVGD +E D +GDE
Sbjct: 10 VCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGD---------IEVKDLMVGDE 60
Query: 292 AFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVF--KYLRAEPEDHHFLMTEPPLNTPEN 462
A + V YP+ +GIV++WD M +++ F + +P + L+TEPPLN +N
Sbjct: 61 ASQLRYMLEVNYPMDNGIVRNWDDM-KHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKN 119
Query: 463 RXYLAEIMFESFNVPGLYIAVQAVLALAA 549
R + E+MFE++ G+YIA+QAVL L A
Sbjct: 120 REKMIEVMFENYQFEGVYIAIQAVLTLYA 148
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTHI PV EG+
Sbjct: 159 SGDGVTHICPVYEGF 173
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 61.3 bits (142), Expect(2) = 1e-15
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +1
Query: 97 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 276
M D + A VID G+G K GFAG+ P+ + PS VG + + + D
Sbjct: 1 MDDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDS 52
Query: 277 FIGDEAFEATG-YSVKYPVRHGIVQDWDLMER 369
++GDEA G ++KYP+ HGIV +WD ME+
Sbjct: 53 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEK 84
Score = 39.5 bits (88), Expect(2) = 1e-15
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = +1
Query: 472 LAEIMFESFNVPGLYIAVQAVLALAASWKS 561
+ +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 82 MEKIMFETFNSPAMYVAIQAVLSLYASGRT 111
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ EGY
Sbjct: 118 SGDGVTHTVPIYEGY 132
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 64.5 bits (150), Expect = 7e-11
Identities = 31/58 (53%), Positives = 40/58 (68%)
Frame = +1
Query: 388 FKYLRAEPEDHHFLMTEPPLNTPENRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
F LR ED L+TE PLN NR + ++MFESFNVP +Y+AVQAV+AL AS ++
Sbjct: 2136 FDQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALYASGRT 2193
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 64.1 bits (149), Expect = 9e-11
Identities = 27/79 (34%), Positives = 47/79 (59%)
Frame = +1
Query: 325 PVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENRXYLAEIMFESFNV 504
P++ G+++DWDL E+ ++ K ++++ H LM+E NT R L E+MFE +NV
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 505 PGLYIAVQAVLALAASWKS 561
P ++ +VL A+ +S
Sbjct: 63 PAFFLCKNSVLTAFANGRS 81
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +1
Query: 199 IAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVK 321
IAIKE+AKVG++S R K VEDLDFFIGDEA + Y+ K
Sbjct: 2 IAIKESAKVGNKSLGRSAKGVEDLDFFIGDEAIDKPSYATK 42
Score = 35.9 bits (79), Expect = 0.029
Identities = 17/24 (70%), Positives = 18/24 (75%)
Frame = +1
Query: 520 AVQAVLALAASWKSRTSAERTFTG 591
A +AVLALAASW SR ERT TG
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTG 63
Score = 35.9 bits (79), Expect = 0.029
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGYV 653
+GDGVTH++PVAEGYV
Sbjct: 68 SGDGVTHVIPVAEGYV 83
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/48 (52%), Positives = 35/48 (72%)
Frame = +1
Query: 418 HHFLMTEPPLNTPENRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
H L+TE PLN NR AE+ FE+FNVP L+I++QAVL+L A+ ++
Sbjct: 127 HPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRT 174
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
AGDGV+H VP+ EG+
Sbjct: 181 AGDGVSHSVPIYEGF 195
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = +1
Query: 481 IMFESFNVPGLYIAVQAVLALAASWKS 561
IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRT 27
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGV+H VP+ EGY
Sbjct: 34 SGDGVSHNVPIYEGY 48
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 115 ACVIDVGTGYTKLGFAGNKEPQFIIPSTI 201
A V+D G G +K+GFAG++ P+ I P+ +
Sbjct: 702 AIVLDNGCGISKIGFAGDRVPRIIQPAVV 730
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 121 VIDVGTGYTKLGFAGNKEPQFIIPSTI 201
VIDVG+ K+GFAG+ P+ + P +
Sbjct: 1360 VIDVGSHMWKVGFAGDDAPKGVFPPIV 1386
>SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)
Length = 1814
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = +1
Query: 133 GTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGY 312
GT KL F E I + + + Q + +A+ +L+ + F T Y
Sbjct: 1230 GTTLEKLTFGSVLESADQIVTHADVLKELNSRAQGEVSIREALRELELWGAGAVFSLTSY 1289
Query: 313 SVKYPVRHGIVQDWDLMERYI--EQCVFKYLRAEP 411
S + I++DW + + QC+ + L+ P
Sbjct: 1290 SDSHEKELSIIKDWKELVNQVGDNQCLLQSLKDSP 1324
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 324 SCAPRYRTRLGFNGKVHRTVRV*VSPCGTRRSSFLN 431
+C PRYR GFN + RTV V PC S ++
Sbjct: 2331 TCTPRYR---GFNCTILRTVCTDVQPCDKGNCSMIS 2363
>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 324 ILYRVSCGFKSFIT--DEKIQIFDSLSHPPSTLIA 226
I Y + C F +F D K IFD SHP +++A
Sbjct: 1200 IEYNIDCKFDTFSATIDVKKTIFDLQSHPTDSIVA 1234
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 522 CTSRSCFGCVMEVTYVC*THLHWXSXXTAGDGVTH 626
C S F V+E Y+C HW + DG+ H
Sbjct: 2549 CNSGYGFSTVVEKMYMCSVSDHWIHARMSVDGLAH 2583
>SB_15553| Best HMM Match : SCP (HMM E-Value=1.1e-16)
Length = 141
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 433 TEPPLNTPENRXYLAEIMFESFNVPGLYIAVQAVLA 540
T PP N P +A++M++S + G+ I+ V+A
Sbjct: 88 TNPPANAPAGTEEVAQLMWQSTSAVGVGISGNVVVA 123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,139,319
Number of Sequences: 59808
Number of extensions: 408023
Number of successful extensions: 913
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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