Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_B02
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 257 6e-69
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 120 9e-28
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 120 9e-28
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 120 9e-28
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 120 9e-28
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 120 9e-28
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 120 9e-28
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 120 1e-27
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 119 2e-27
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 118 5e-27
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 107 9e-24
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 102 2e-22
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 101 4e-22
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 89 3e-18
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 79 3e-15
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 60 2e-09
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 60 2e-09
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 59 2e-09
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 56 2e-08
U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediat... 28 6.7
AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans receptor-medi... 28 6.7
AF047661-5|AAU05544.1| 822|Caenorhabditis elegans Hypothetical ... 28 6.7
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 27 8.8
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 257 bits (629), Expect = 6e-69
Identities = 123/167 (73%), Positives = 137/167 (82%), Gaps = 6/167 (3%)
Frame = +1
Query: 109 LPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKE-TAKVGDQSTR---RMTKAVEDLDF 276
LPACVID GTGYTKLG+AGN EPQFIIPS IA+K+ A Q+ R R+ ++DLDF
Sbjct: 6 LPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGIDDLDF 65
Query: 277 FIGDEAFE--ATGYSVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLN 450
FIGDEA AT Y+VKYP+RHGIV+DWDLMERY EQC+FKYLRAEPEDH FL+TEPPLN
Sbjct: 66 FIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLN 125
Query: 451 TPENRXYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTG 591
TPENR Y AEIMFESFNVPGLYIAVQAVLAL ASW SR + ER+ TG
Sbjct: 126 TPENREYTAEIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTG 172
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGYV 653
+GDGVTH +PVA+GYV
Sbjct: 177 SGDGVTHCIPVADGYV 192
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 120 bits (289), Expect = 9e-28
Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 283 GDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 459
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 460 NRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
NR + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ EGY
Sbjct: 156 SGDGVTHTVPIYEGY 170
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 120 bits (289), Expect = 9e-28
Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 283 GDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 459
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 460 NRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
NR + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ EGY
Sbjct: 156 SGDGVTHTVPIYEGY 170
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 120 bits (289), Expect = 9e-28
Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 283 GDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 459
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 460 NRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
NR + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ EGY
Sbjct: 156 SGDGVTHTVPIYEGY 170
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 120 bits (289), Expect = 9e-28
Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 283 GDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 459
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 460 NRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
NR + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ EGY
Sbjct: 156 SGDGVTHTVPIYEGY 170
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 120 bits (289), Expect = 9e-28
Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 283 GDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 459
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 460 NRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
NR + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ EGY
Sbjct: 156 SGDGVTHTVPIYEGY 170
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 120 bits (289), Expect = 9e-28
Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 283 GDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 459
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 460 NRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
NR + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ EGY
Sbjct: 156 SGDGVTHTVPIYEGY 170
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 120 bits (288), Expect = 1e-27
Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 283 GDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 459
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 460 NRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
NR + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ EGY
Sbjct: 156 SGDGVTHTVPIYEGY 170
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 119 bits (286), Expect = 2e-27
Identities = 61/154 (39%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
D + A ++D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DDVAALILDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 283 GDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 459
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 460 NRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
NR + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ EGY
Sbjct: 156 SGDGVTHTVPIYEGY 170
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 118 bits (283), Expect = 5e-27
Identities = 61/156 (39%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Frame = +1
Query: 97 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 276
M + + A V+D G+G K GFAG+ P+ + PS VG + + + D
Sbjct: 1 MEEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDS 52
Query: 277 FIGDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNT 453
++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 53 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNP 112
Query: 454 PENRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
NR + +IMFE+FN P +Y+ +QAVL+L AS ++
Sbjct: 113 KSNREKMTQIMFETFNTPAMYVNIQAVLSLYASGRT 148
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 609 GDGVTHIVPVAEGY 650
GDGVTH VP+ EGY
Sbjct: 156 GDGVTHTVPIYEGY 169
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 107 bits (256), Expect = 9e-24
Identities = 55/139 (39%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Frame = +1
Query: 148 KLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGY-SVKY 324
+ GFAG+ P+ + PS VG + + + D ++GDEA G ++KY
Sbjct: 5 RAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 56
Query: 325 PVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENRXYLAEIMFESFNV 504
P+ HGIV +WD ME+ + LR PE+H L+TE PLN NR + +IMFE+FN
Sbjct: 57 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 116
Query: 505 PGLYIAVQAVLALAASWKS 561
P +Y+A+QAVL+L AS ++
Sbjct: 117 PAMYVAIQAVLSLYASGRT 135
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ EGY
Sbjct: 142 SGDGVTHTVPIYEGY 156
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 102 bits (245), Expect = 2e-22
Identities = 61/149 (40%), Positives = 87/149 (58%), Gaps = 2/149 (1%)
Frame = +1
Query: 121 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 300
VID G+G K GFAG ++P+ ++ VG R+ D D FIG +A
Sbjct: 12 VIDNGSGVIKAGFAGEQQPK--------VRFANFVGRPKYHRVMAGGLDGDIFIGPKAES 63
Query: 301 ATG-YSVKYPVRHGIVQDWDLMERYIEQCVFK-YLRAEPEDHHFLMTEPPLNTPENRXYL 474
G +S++YP+ HGIV +W ME+ E + L+ PE+H L+T+ PLN +NR
Sbjct: 64 NRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRERS 123
Query: 475 AEIMFESFNVPGLYIAVQAVLALAASWKS 561
AEI FE+FNVP LYI +QAVL+L A+ ++
Sbjct: 124 AEIFFETFNVPALYIQMQAVLSLYATGRT 152
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ +G+
Sbjct: 159 SGDGVTHAVPIVKGF 173
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 101 bits (242), Expect = 4e-22
Identities = 46/98 (46%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
Frame = +1
Query: 271 DFFIGDEAFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPL 447
D ++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PL
Sbjct: 8 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 67
Query: 448 NTPENRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
N NR + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 68 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 105
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTH VP+ EGY
Sbjct: 112 SGDGVTHTVPIYEGY 126
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 88.6 bits (210), Expect = 3e-18
Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 5/148 (3%)
Frame = +1
Query: 121 VIDVGTGYTKLGFAGNKEPQFIIPSTIA---IKETAKVGDQSTRRMTKAVEDLDFFIGDE 291
V+D GTG+ K G+AG P I PS + ++ T +VG+ +E D +G+E
Sbjct: 10 VVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGN---------IEIKDLMVGEE 60
Query: 292 AFEATGY-SVKYPVRHGIVQDWDLMERYIEQCVF-KYLRAEPEDHHFLMTEPPLNTPENR 465
+ + YP+ +GIV++WD M + + L +P++ L+TEPPLN NR
Sbjct: 61 CSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNR 120
Query: 466 XYLAEIMFESFNVPGLYIAVQAVLALAA 549
+ ++MFE + +Y+AVQAVL L A
Sbjct: 121 EKMFQVMFEQYGFNSIYVAVQAVLTLYA 148
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 606 AGDGVTHIVPVAEGY 650
+GDGVTHI PV EG+
Sbjct: 159 SGDGVTHICPVYEGF 173
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 79.0 bits (186), Expect = 3e-15
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 10/164 (6%)
Frame = +1
Query: 100 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKET--------AKVGDQSTRRMTK 255
GD + V D G+ ++GFAG + P+ IPS IA++E + ++ +
Sbjct: 8 GDEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEGDNSKVQ 67
Query: 256 AVEDLDFFIGDEAF--EATGYSVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDHHFL 429
+ +FFIG +++ ++ G+++DW+L E+ +E L + P +H L
Sbjct: 68 TKREKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYSNPSEHPVL 127
Query: 430 MTEPPLNTPENRXYLAEIMFESFNVPGLYIAVQAVLALAASWKS 561
+E N R L EIMFE F VP Y++ VL+ A ++
Sbjct: 128 FSESSWNDRARREKLTEIMFEKFQVPAYYLSKNVVLSCFAQGRT 171
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 283 GDEAFEATG-YSVKYPVRHGIVQDWDLMER 369
GDEA G ++KYP+ HGIV +WD ME+
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEK 85
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 283 GDEAFEATG-YSVKYPVRHGIVQDWDLMER 369
GDEA G ++KYP+ HGIV +WD ME+
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEK 85
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 59.3 bits (137), Expect = 2e-09
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 283 GDEAFEATG-YSVKYPVRHGIVQDWDLMER 369
GDEA G ++KYP+ HGIV +WD ME+
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEK 85
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +1
Query: 103 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 282
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 283 GDEAFEATG-YSVKYPVRHGIVQDWDLM 363
GDEA G ++KYP+ HGIV +WD M
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDM 83
>U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediated
endocytosis protein6, isoform a protein.
Length = 1093
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = +1
Query: 241 RRMTKAVEDLDFFIGDEAFEATGYSVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDH 420
RR+T+ + +DF + F TG++ K+ V G Q+ + ++ ++ FKYLRA+ E
Sbjct: 847 RRLTEQIL-VDFLM--RTFLETGFNNKHTV--GKTQEVTAVLKFYDE--FKYLRAQDERA 899
Query: 421 HFL 429
FL
Sbjct: 900 EFL 902
>AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans receptor-mediated
endocytosis 6 protein.
Length = 1093
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = +1
Query: 241 RRMTKAVEDLDFFIGDEAFEATGYSVKYPVRHGIVQDWDLMERYIEQCVFKYLRAEPEDH 420
RR+T+ + +DF + F TG++ K+ V G Q+ + ++ ++ FKYLRA+ E
Sbjct: 847 RRLTEQIL-VDFLM--RTFLETGFNNKHTV--GKTQEVTAVLKFYDE--FKYLRAQDERA 899
Query: 421 HFL 429
FL
Sbjct: 900 EFL 902
>AF047661-5|AAU05544.1| 822|Caenorhabditis elegans Hypothetical
protein M70.4 protein.
Length = 822
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 421 DDLRVPHGDT*TRTVRCTFPLNPSLVRYRGAQDTLQSI 308
+DL +P G+ + +F L SL ++ G +DT S+
Sbjct: 418 EDLNIPQGNNWANPIHTSFCLPKSLHKWAGRRDTSSSM 455
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +3
Query: 501 CARPLHCCTSRSCF-GCVMEVTYV 569
CA PL C S CF GCV YV
Sbjct: 582 CANPLGRCGSGQCFSGCVCRQPYV 605
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +3
Query: 501 CARPLHCCTSRSCF-GCVMEVTYV 569
CA PL C S CF GCV YV
Sbjct: 373 CANPLGRCGSGQCFSGCVCRQPYV 396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,724,356
Number of Sequences: 27780
Number of extensions: 304919
Number of successful extensions: 696
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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