SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_A22
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   265   4e-72
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   264   6e-72
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   264   6e-72
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...   149   5e-37
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...   141   7e-35
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    96   3e-21
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    50   3e-07
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    44   2e-05
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    38   0.001
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    35   0.012
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    33   0.036
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    32   0.063
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    32   0.063
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    30   0.25 
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    29   0.44 
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    29   0.44 
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    29   0.44 
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    27   2.4  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    27   3.1  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   3.1  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    25   9.5  

>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  265 bits (649), Expect = 4e-72
 Identities = 128/165 (77%), Positives = 137/165 (83%)
 Frame = +2

Query: 140 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKY 319
           HLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY
Sbjct: 26  HLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85

Query: 320 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 499
            VT+IDAPGHRDFIKNMITGTSQADCAVLI+  GTGEFEAGISK+GQTREHALLA+TLGV
Sbjct: 86  NVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGV 145

Query: 500 KQLIVXVNKMDSTEPPYSEPXFXXXXXXXXXXXXXXGYNPXAVAF 634
           KQLIV VNKMD+T   +S+  F              G+NP  V F
Sbjct: 146 KQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPF 188



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = +1

Query: 64  MGKEKTHINIVVIGHVDSGKSTTTGSL 144
           MGKEK HIN+VVIGHVDSGKSTTTG L
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHL 27


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  264 bits (648), Expect = 6e-72
 Identities = 127/165 (76%), Positives = 137/165 (83%)
 Frame = +2

Query: 140 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKY 319
           HLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY
Sbjct: 26  HLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85

Query: 320 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 499
            VT+IDAPGHRDFIKNMITGTSQADCA+LI+  GTGEFEAGISK+GQTREHALLA+TLGV
Sbjct: 86  NVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGV 145

Query: 500 KQLIVXVNKMDSTEPPYSEPXFXXXXXXXXXXXXXXGYNPXAVAF 634
           KQLIV VNKMD+T   +S+  F              G+NP  V F
Sbjct: 146 KQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPF 188



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = +1

Query: 64  MGKEKTHINIVVIGHVDSGKSTTTGSL 144
           MGKEK HIN+VVIGHVDSGKSTTTG L
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHL 27


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  264 bits (648), Expect = 6e-72
 Identities = 127/165 (76%), Positives = 137/165 (83%)
 Frame = +2

Query: 140 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKY 319
           HLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY
Sbjct: 26  HLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85

Query: 320 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 499
            VT+IDAPGHRDFIKNMITGTSQADCA+LI+  GTGEFEAGISK+GQTREHALLA+TLGV
Sbjct: 86  NVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGV 145

Query: 500 KQLIVXVNKMDSTEPPYSEPXFXXXXXXXXXXXXXXGYNPXAVAF 634
           KQLIV VNKMD+T   +S+  F              G+NP  V F
Sbjct: 146 KQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPF 188



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = +1

Query: 64  MGKEKTHINIVVIGHVDSGKSTTTGSL 144
           MGKEK HIN+VVIGHVDSGKSTTTG L
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHL 27


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score =  149 bits (360), Expect = 5e-37
 Identities = 66/142 (46%), Positives = 96/142 (67%)
 Frame = +2

Query: 140 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKY 319
           ++++  G +DKRT+EK E+EA+E GK S+  +W LD    ERE+G T+++    FET   
Sbjct: 257 NILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 316

Query: 320 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 499
             +++DAPGH+ ++ NMI G SQAD  VL+++A  GEFEAG  + GQTREHA+LA T G+
Sbjct: 317 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGI 376

Query: 500 KQLIVXVNKMDSTEPPYSEPXF 565
             L+V +NKMD     +SE  +
Sbjct: 377 NHLVVVINKMDEPSVQWSEERY 398



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +1

Query: 76  KTHINIVVIGHVDSGKSTTTGSL 144
           K H+NIV IGHVD+GKST  G++
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNI 258


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score =  141 bits (342), Expect = 7e-35
 Identities = 65/130 (50%), Positives = 87/130 (66%)
 Frame = +2

Query: 143 LIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYY 322
           ++++ G I+ R+++K   EA   GKGSF YAW+LD  + ER RG+T+D+A   FE+ K  
Sbjct: 197 IMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKI 256

Query: 323 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 502
             I DAPGHRDFI  MI G S AD AVL+V +    FE G  +NGQTREHA L   LG+ 
Sbjct: 257 YEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGIS 316

Query: 503 QLIVXVNKMD 532
           +++V VNK+D
Sbjct: 317 EIVVSVNKLD 326



 Score = 31.5 bits (68), Expect = 0.11
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 76  KTHINIVVIGHVDSGKSTTTGSLDLQM 156
           K  +++VV GHVDSGKST  G +  ++
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFEL 201


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 96.3 bits (229), Expect = 3e-21
 Identities = 50/117 (42%), Positives = 71/117 (60%)
 Frame = +2

Query: 206 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTS 385
           ++G+ SF     +DK   E+ RGITI  A  ++ET   +   +D PGH D+IKNMITG +
Sbjct: 79  DLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAA 138

Query: 386 QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSE 556
             D A+++V+A  G+         QTREH LLA  +GVKQ++V +NK+D  EP   E
Sbjct: 139 TMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIE 188



 Score = 34.7 bits (76), Expect = 0.012
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 70  KEKTHINIVVIGHVDSGKSTTTGSL 144
           ++K H+NI  IGHVD GK+T T ++
Sbjct: 49  RKKPHVNIGTIGHVDHGKTTLTAAI 73


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 35/98 (35%), Positives = 50/98 (51%)
 Frame = +2

Query: 239 VLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 418
           V+D L AER+RGITI+ A   F      + +ID PGH DF   +    +  D AV I+  
Sbjct: 67  VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-- 124

Query: 419 GTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMD 532
              +  AG+    QT+     A   G+ + ++ VNKMD
Sbjct: 125 ---DGSAGV--EAQTKVVWKQATKRGIPK-VIFVNKMD 156



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 88  NIVVIGHVDSGKSTTT 135
           N+ +I H+D+GK+T T
Sbjct: 30  NVGIIAHIDAGKTTLT 45


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
 Frame = +2

Query: 242 LDKLKAERERGITIDIA----LWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 409
           LDKL+ ER RGIT+       ++ +    Y + +ID PGH DF   ++   +  +  +L+
Sbjct: 95  LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154

Query: 410 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMD 532
           V A  G          QT  +  +AF+  +  +I  +NK+D
Sbjct: 155 VDASQG-------IQAQTLSNFYMAFSQNL-VIIPVLNKVD 187


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +2

Query: 320 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 499
           +V+ +D PGH   +  M+ G +  D A+L++A              QT EH      + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162

Query: 500 KQLIVXVNKMD 532
           K +I+  NK+D
Sbjct: 163 KHIIILQNKVD 173



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 58  PKMGKEKTHINIVVIGHVDSGKSTTTGSL 144
           P +   +  INI  IGHV  GKST   ++
Sbjct: 15  PAIISRQATINIGTIGHVAHGKSTVVKAI 43


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +2

Query: 212 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETXKYYVTIIDAPGHRDFIKNMITGTS 385
           GK +   A+    + +    GIT  I  +   F+    ++T +D PGH  F      G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242

Query: 386 QADCAVLIVAAGTG 427
            AD  VL+VA   G
Sbjct: 243 IADIVVLVVAGDDG 256


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 317 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 472
           Y + IID PGH DF   +       D AVL++ A +G     I+ + Q R +
Sbjct: 145 YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +1

Query: 64  MGKEKTHINIVVIGHVDSGKSTTTGSL 144
           MGK     N+ VI HVD GKST T SL
Sbjct: 13  MGKPSNVRNMSVIAHVDHGKSTLTDSL 39



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 317 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 412
           + V +ID+PGH DF   +       D A+++V
Sbjct: 98  FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +1

Query: 64  MGKEKTHINIVVIGHVDSGKSTTTGSL 144
           MGK     N+ VI HVD GKST T SL
Sbjct: 13  MGKPSNVRNMSVIAHVDHGKSTLTDSL 39



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 317 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 412
           + V +ID+PGH DF   +       D A+++V
Sbjct: 98  FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 317 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 427
           Y + +ID+PGH DF   + + +   D A ++V A  G
Sbjct: 94  YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 282 IVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 154
           I IP+   A S+ N++ + +D LP  +   S    V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = +2

Query: 245 DKLKAER-ERGITIDIALWKFETXKYYV--TIIDAPGHRDFIKN 367
           +K++A+  E+ + I+I   + E   +++  T+ID PG  DFI N
Sbjct: 60  EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 329 IIDAPGHRDFIKNMITGTSQADCAVLIV 412
           IID PGH  F      GTS  + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +2

Query: 260 ERERGITID-----IALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 412
           ERER ++I      +A+   +   +    ID PGH DF+  +    + +D  VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 306 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 175
           S F   IS+ +P     FSL+ ++   K  LPI W S  + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
 Frame = -2

Query: 272 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWYVC-----QYHHICRSSEPVVVDLPE 114
           H+H  PL  P+P     +L P P  P   S WY          H   S  PV+ +LP+
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPNLPK 191


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 206 PGPPSRTSRWYVCQYHHIC 150
           P PP +T + Y  QY+ +C
Sbjct: 8   PAPPKKTLQLYTPQYYGLC 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,344
Number of Sequences: 5004
Number of extensions: 44098
Number of successful extensions: 146
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -