Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_A22
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 291 3e-79
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 291 3e-79
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 254 5e-68
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 195 4e-57
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 169 2e-42
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 169 2e-42
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 156 1e-38
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 89 3e-18
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 88 6e-18
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 88 6e-18
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 78 6e-15
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 78 6e-15
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 78 6e-15
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 54 9e-08
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 43 2e-04
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 41 7e-04
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 40 0.001
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 40 0.002
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 35 0.044
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 33 0.18
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 32 0.31
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 32 0.31
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 30 1.2
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 30 1.6
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 30 1.6
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.6
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.2
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.2
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 29 3.8
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 6.7
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 28 6.7
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 28 6.7
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 291 bits (714), Expect = 3e-79
Identities = 139/165 (84%), Positives = 142/165 (86%)
Frame = +2
Query: 140 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKY 319
HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET KY
Sbjct: 26 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKY 85
Query: 320 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 499
Y+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGV
Sbjct: 86 YITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGV 145
Query: 500 KQLIVXVNKMDSTEPPYSEPXFXXXXXXXXXXXXXXGYNPXAVAF 634
KQLIV NKMDSTEPP+SE F GYNP AV F
Sbjct: 146 KQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF 190
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/27 (92%), Positives = 25/27 (92%)
Frame = +1
Query: 64 MGKEKTHINIVVIGHVDSGKSTTTGSL 144
MGKEK HINIVVIGHVDSGKSTTTG L
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHL 27
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 291 bits (714), Expect = 3e-79
Identities = 139/165 (84%), Positives = 142/165 (86%)
Frame = +2
Query: 140 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKY 319
HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET KY
Sbjct: 26 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKY 85
Query: 320 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 499
Y+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGV
Sbjct: 86 YITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGV 145
Query: 500 KQLIVXVNKMDSTEPPYSEPXFXXXXXXXXXXXXXXGYNPXAVAF 634
KQLIV NKMDSTEPP+SE F GYNP AV F
Sbjct: 146 KQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF 190
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/27 (92%), Positives = 25/27 (92%)
Frame = +1
Query: 64 MGKEKTHINIVVIGHVDSGKSTTTGSL 144
MGKEK HINIVVIGHVDSGKSTTTG L
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHL 27
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 254 bits (621), Expect = 5e-68
Identities = 118/124 (95%), Positives = 121/124 (97%)
Frame = +2
Query: 140 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKY 319
HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET KY
Sbjct: 26 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKY 85
Query: 320 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 499
Y+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGV
Sbjct: 86 YITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGV 145
Query: 500 KQLI 511
KQL+
Sbjct: 146 KQLV 149
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/27 (92%), Positives = 25/27 (92%)
Frame = +1
Query: 64 MGKEKTHINIVVIGHVDSGKSTTTGSL 144
MGKEK HINIVVIGHVDSGKSTTTG L
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHL 27
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 195 bits (476), Expect(2) = 4e-57
Identities = 89/92 (96%), Positives = 91/92 (98%)
Frame = +2
Query: 140 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKY 319
HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET KY
Sbjct: 26 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKY 85
Query: 320 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 415
Y+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 86 YITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/27 (92%), Positives = 25/27 (92%)
Frame = +1
Query: 64 MGKEKTHINIVVIGHVDSGKSTTTGSL 144
MGKEK HINIVVIGHVDSGKSTTTG L
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHL 27
Score = 44.0 bits (99), Expect(2) = 4e-57
Identities = 21/43 (48%), Positives = 23/43 (53%)
Frame = +2
Query: 506 LIVXVNKMDSTEPPYSEPXFXXXXXXXXXXXXXXGYNPXAVAF 634
L+V NKMDSTEPP+SE F GYNP AV F
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF 156
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 169 bits (410), Expect = 2e-42
Identities = 78/134 (58%), Positives = 98/134 (73%)
Frame = +2
Query: 140 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKY 319
HL++ +D RTI+KF+ EA GK SF YAWVLD+ + ERERG+T+DI FET
Sbjct: 189 HLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEERERGVTMDIGRTSFETSHR 248
Query: 320 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 499
+ ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL +LGV
Sbjct: 249 RIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGV 308
Query: 500 KQLIVXVNKMDSTE 541
QLIV VNK+D+ +
Sbjct: 309 TQLIVAVNKLDTVD 322
Score = 35.1 bits (77), Expect = 0.044
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1
Query: 73 EKTHINIVVIGHVDSGKSTTTGSL 144
+K IN++V+GHVD+GKST G L
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHL 190
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 169 bits (410), Expect = 2e-42
Identities = 78/134 (58%), Positives = 98/134 (73%)
Frame = +2
Query: 140 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKY 319
HL++ +D RTI+KF+ EA GK SF YAWVLD+ + ERERG+T+DI FET
Sbjct: 207 HLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEERERGVTMDIGRTSFETSHR 266
Query: 320 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 499
+ ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL +LGV
Sbjct: 267 RIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGV 326
Query: 500 KQLIVXVNKMDSTE 541
QLIV VNK+D+ +
Sbjct: 327 TQLIVAVNKLDTVD 340
Score = 35.1 bits (77), Expect = 0.044
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1
Query: 73 EKTHINIVVIGHVDSGKSTTTGSL 144
+K IN++V+GHVD+GKST G L
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHL 208
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 156 bits (378), Expect = 1e-38
Identities = 71/159 (44%), Positives = 101/159 (63%)
Frame = +2
Query: 143 LIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYY 322
L++ G +DKRT+EK+E+EA+E G+ S+ +W +D ERE+G T+++ FET K +
Sbjct: 129 LMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMDTNDEEREKGKTVEVGRAYFETEKRH 188
Query: 323 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 502
TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L T GVK
Sbjct: 189 FTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVK 248
Query: 503 QLIVXVNKMDSTEPPYSEPXFXXXXXXXXXXXXXXGYNP 619
L++ VNKMD + E F G+NP
Sbjct: 249 HLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNP 287
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +1
Query: 67 GKEKTHINIVVIGHVDSGKSTTTGSL 144
G K HIN+V +GHVD+GKST G L
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQL 129
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 89.0 bits (211), Expect = 3e-18
Identities = 39/42 (92%), Positives = 40/42 (95%)
Frame = +2
Query: 140 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 265
HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK +
Sbjct: 26 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKVTK 67
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/27 (92%), Positives = 25/27 (92%)
Frame = +1
Query: 64 MGKEKTHINIVVIGHVDSGKSTTTGSL 144
MGKEK HINIVVIGHVDSGKSTTTG L
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHL 27
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 87.8 bits (208), Expect = 6e-18
Identities = 47/100 (47%), Positives = 63/100 (63%)
Frame = +2
Query: 242 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 421
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 422 TGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTE 541
G E QT+EH +LA +GVK + + +NK D E
Sbjct: 143 DGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 76 KTHINIVVIGHVDSGKSTTTGSL 144
K ++N+ IGH+D GK+T T ++
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAI 65
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 87.8 bits (208), Expect = 6e-18
Identities = 47/100 (47%), Positives = 63/100 (63%)
Frame = +2
Query: 242 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 421
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 422 TGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTE 541
G E QT+EH +LA +GVK + + +NK D E
Sbjct: 143 DGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 76 KTHINIVVIGHVDSGKSTTTGSL 144
K ++N+ IGH+D GK+T T ++
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAI 65
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 77.8 bits (183), Expect = 6e-15
Identities = 44/99 (44%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Frame = +2
Query: 242 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 421
+D E+ RGITI+ ++ET K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 87 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 146
Query: 422 TGEFEAGISKNGQTREHALLAFTLGV--KQLIVXVNKMD 532
G QTREH LLA +GV ++V +NK+D
Sbjct: 147 DGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD 178
Score = 34.3 bits (75), Expect = 0.077
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 70 KEKTHINIVVIGHVDSGKSTTTGSL 144
++K H+N+ IGHVD GK+T T ++
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAI 69
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 77.8 bits (183), Expect = 6e-15
Identities = 44/99 (44%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Frame = +2
Query: 242 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 421
+D E+ RGITI+ ++ET K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 422 TGEFEAGISKNGQTREHALLAFTLGV--KQLIVXVNKMD 532
G QTREH LLA +GV ++V +NK+D
Sbjct: 148 DGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD 179
Score = 34.3 bits (75), Expect = 0.077
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 70 KEKTHINIVVIGHVDSGKSTTTGSL 144
++K H+N+ IGHVD GK+T T ++
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAI 70
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 77.8 bits (183), Expect = 6e-15
Identities = 44/99 (44%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Frame = +2
Query: 242 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 421
+D E+ RGITI+ ++ET K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 422 TGEFEAGISKNGQTREHALLAFTLGV--KQLIVXVNKMD 532
G QTREH LLA +GV ++V +NK+D
Sbjct: 148 DGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD 179
Score = 34.3 bits (75), Expect = 0.077
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 70 KEKTHINIVVIGHVDSGKSTTTGSL 144
++K H+N+ IGHVD GK+T T ++
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAI 70
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 54.0 bits (124), Expect = 9e-08
Identities = 35/98 (35%), Positives = 49/98 (50%)
Frame = +2
Query: 239 VLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 418
+LDKL+ ERERGIT+ Y + +ID PGH DF + + D +L+VAA
Sbjct: 76 MLDKLQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAA 135
Query: 419 GTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMD 532
G QT + LAF + Q+I +NK+D
Sbjct: 136 NQG-------VQAQTIANFWLAFEKNI-QIIPVINKID 165
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 42.7 bits (96), Expect = 2e-04
Identities = 38/108 (35%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Frame = +2
Query: 212 GKGSFKYAWVLDKLKAERERGITIDIALWKFETXK-YYVTIIDAPGHRDFIKNMITGTSQ 388
GK + A ++ A GIT I + E K VT +D PGH F G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 389 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMD 532
AD VL+VAA G E QT + A V QL+V VNK+D
Sbjct: 228 ADIVVLVVAADDGVKE-------QTAQSIKFAKDANV-QLVVAVNKID 267
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 41.1 bits (92), Expect = 7e-04
Identities = 32/97 (32%), Positives = 43/97 (44%)
Frame = +2
Query: 242 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 421
+D + ER+RGITI A + + IID PGH DF + D AVL++ G
Sbjct: 87 MDFMDLERQRGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CG 145
Query: 422 TGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMD 532
G G+ T L + + I VNKMD
Sbjct: 146 VG----GVQSQTFTVNRQLARYNV---PFICFVNKMD 175
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +2
Query: 323 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 502
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 503 QLIVXVNKMDSTE 541
++I+ +NK D E
Sbjct: 127 RVIIVLNKCDLAE 139
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 85 INIVVIGHVDSGKSTTT 135
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +2
Query: 239 VLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 418
V D L ERERGIT+ A + + + +ID PGH DF + D V+++
Sbjct: 64 VTDFLDIERERGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDG 123
Query: 419 GTG 427
G
Sbjct: 124 SAG 126
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +2
Query: 320 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 499
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 500 KQLIVXVNKMD 532
L++ NK+D
Sbjct: 182 NHLMILQNKVD 192
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 242 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 412
+D + E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 242 LDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 412
+D + E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 32.3 bits (70), Expect = 0.31
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +2
Query: 245 DKLKAERERGITI-----DIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 409
D L E++RG +I I + Y + IID PGH +F M AD V++
Sbjct: 172 DILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVM 231
Query: 410 VAAGTG 427
V A G
Sbjct: 232 VDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 32.3 bits (70), Expect = 0.31
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +2
Query: 245 DKLKAERERGITI-----DIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 409
D L E++RG +I I + Y + IID PGH +F M AD V++
Sbjct: 47 DILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVM 106
Query: 410 VAAGTG 427
V A G
Sbjct: 107 VDAHEG 112
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -1
Query: 525 LFTXTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 397
LF T+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 64 MGKEKTHINIVVIGHVDSGKSTTTGSL 144
M +++ N+ VI HVD GKST T SL
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSL 39
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 278 TIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 427
T+++ K + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 64 MGKEKTHINIVVIGHVDSGKSTTTGSL 144
M +++ N+ VI HVD GKST T SL
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSL 39
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 278 TIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 427
T+++ K + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 329 IIDAPGHRDFIKNMITGTSQADCAVLIV 412
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 167 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 268
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 167 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 268
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 85 INIVVIGHVDSGKSTTT 135
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 28.7 bits (61), Expect = 3.8
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = -3
Query: 508 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 350
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 349 VSRSINDGNIVLXSFELPESNIDCDTTLTLSL*FVQYPSI 230
S S +D E+P ++ C++ +L + +Y SI
Sbjct: 84 FSGSKSDA-------EIPSTSNRCESFKWSNLDYSKYLSI 116
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 323 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 418
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 58 PKMGKEKTHINIVVIGHVDSGKSTTTGSL 144
P K+ + V+G+VD+GKST G L
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVL 160
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 58 PKMGKEKTHINIVVIGHVDSGKSTTTGSL 144
P K+ + V+G+VD+GKST G L
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVL 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,602,665
Number of Sequences: 27780
Number of extensions: 257983
Number of successful extensions: 715
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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