Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_A20
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    46   5e-06
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    29   0.57 
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    27   2.3  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   4.0  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   7.0  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   9.3  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 45.6 bits (103), Expect = 5e-06
 Identities = 21/44 (47%), Positives = 27/44 (61%)
 Frame = +1

Query: 169 KFTIDCTHPAEDSILXVGNFXKYLKEHVKVEGKTNNLSNHVVVA 300
           K+ ID T    D I  V  F KYL + +KV+GKT NL + VVV+
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVS 54



 Score = 35.1 bits (77), Expect = 0.007
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 311 TKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYF 454
           +K+A+ A I FS                  DWLRVV++    YELRY+
Sbjct: 59  SKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYY 106


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 153 LDAFAADFATLHSFFASLLVQLGFLS 76
           +D +  DFAT H+ + + L  +GFLS
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGFLS 112


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 2   IFAVFTVTALHVFVCHXWQ 58
           +F    VT +H + CH WQ
Sbjct: 470 LFLTIDVTIMHHYACHVWQ 488


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 169 KFTIDCTHPAEDSILXVGNFXKYLKEHVKVEGKTNNL 279
           K   DC +  + ++  + N  K + +HV  E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 194 GCVQSIVNFKLIFR-LMPLPRILPPFTPFL 108
           G +++I    ++F  L  L RI+ PFTPF+
Sbjct: 743 GEIETINALNVLFEVLFTLVRIMGPFTPFI 772


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 366 KYFRYLFEKGMSAVIATFVLCXG 298
           K+F+Y+  +G   +   FVLC G
Sbjct: 397 KWFKYVDREGRPLLAMAFVLCFG 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,777
Number of Sequences: 5004
Number of extensions: 28050
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)