Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_A19
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    25   6.5  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   6.5  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    24   8.6  

>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -2

Query: 249 NTVLQRCVNRRTDGHRGQVVASDLSMKTGNLTINALQVTNKLSEL 115
           NT+ +  +N   +G   +   +++ +K+   T+N L+ T +  EL
Sbjct: 648 NTIKENSINSHIEGSEMESEETNMPVKSFFSTVNQLEETYEKKEL 692


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 78  LYCLHFYLHKPWGRLFASFST 16
           L+C  F +H  W R F ++ T
Sbjct: 557 LFCYFFRIHDYWSRRFDTYKT 577


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 159 GCPSSYSNPKPLPAPCVHQ 215
           G PSSY NP+    P V Q
Sbjct: 33  GLPSSYGNPQSYGTPPVQQ 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,454,799
Number of Sequences: 5004
Number of extensions: 26763
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)