Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_A19
(427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0919 - 7090494-7091219,7091630-7091763,7091860-7091927,709... 32 0.17
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348... 29 1.6
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 29 2.1
03_06_0762 + 36078414-36078539,36078700-36078750,36078832-360789... 27 4.8
08_02_0260 + 14990324-14990916,14991055-14991245,14997427-149974... 27 6.3
05_03_0497 - 14715267-14715548,14715648-14715830,14715911-147166... 27 6.3
01_06_0790 + 32019972-32020101,32020461-32020657,32020790-320209... 27 6.3
01_03_0202 - 13762042-13762572 27 6.3
05_01_0322 - 2538320-2538742,2539349-2539521,2539764-2539854,254... 27 8.3
>06_01_0919 -
7090494-7091219,7091630-7091763,7091860-7091927,
7092471-7092515,7092620-7092639,7092798-7092860,
7092946-7093115,7093216-7093252
Length = 420
Score = 32.3 bits (70), Expect = 0.17
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 119 SLSLFVTXRALMVRLP-VFILKSEATTCPLCPSVLLLTHLC 238
++ F T R+ ++ LP +F+ K + T C +C S L + C
Sbjct: 364 TMGTFPTSRSFLLNLPLIFVCKEKDTECSICKSTLATKYRC 404
>01_06_1626 -
38734128-38734160,38734386-38734560,38734819-38734878,
38734961-38735059,38735191-38735224,38735315-38735374,
38735596-38735696,38735949-38736014,38736695-38736825,
38736946-38737038,38737273-38737338,38737459-38737494,
38738308-38738382,38738475-38738792
Length = 448
Score = 29.1 bits (62), Expect = 1.6
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +1
Query: 43 PWLVQIEMETI--KHHGFNNSREGIVQFTQLIRDLXSIDG--EVARLHTQIRSHYLPPVS 210
P VQIE +T+ H NS + +F +D + D + RLH HYLP
Sbjct: 125 PLRVQIEAQTVFGALHALQNSSRLLGEFLTH-QDFLTEDFLLDQMRLHADTSRHYLPVTV 183
Query: 211 ISSSVDT 231
I +DT
Sbjct: 184 IKKVIDT 190
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 28.7 bits (61), Expect = 2.1
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +1
Query: 91 NNSREGIVQFTQLIRDLXSIDGEVARLHTQIRSHYLPPVSISSSVDTSL*NSIKGKTXNS 270
N + GIV TQ L ++ LH+ + + L PV ++SV + N KT +
Sbjct: 1586 NGNSSGIVDRTQSSDQLIYAGKDIQGLHSSMDASNLLPVQNANSVLFGVENGTTIKTESG 1645
Query: 271 STVSGVLRFSKLAFI 315
+ +G F AF+
Sbjct: 1646 YSSNGNFGFCGNAFL 1660
>03_06_0762 +
36078414-36078539,36078700-36078750,36078832-36078981,
36079055-36079803,36079914-36080013,36080116-36080259,
36080333-36080452,36080532-36080846
Length = 584
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +1
Query: 124 QLIRDLXSIDGEVARLHTQIRSHYLPPVSISSSVDTSL*NSIKGKTXNSSTVSG 285
+L+ +L ++ E+ARL TQIRS + + +++ ++ N T N++ SG
Sbjct: 112 ELLAELVLVEEEIARLETQIRS--MKKAAATTTTQNAI-NLTHDDTVNANVNSG 162
>08_02_0260 +
14990324-14990916,14991055-14991245,14997427-14997495,
14998134-14999221
Length = 646
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 119 N*TMPSRELLKPWCFIVSISICTSHGEDYLHHF 21
N TM + L W + I + + G DYLHH+
Sbjct: 434 NDTMQQEKFLISWEKLYDILVGVAQGLDYLHHW 466
>05_03_0497 -
14715267-14715548,14715648-14715830,14715911-14716668,
14716762-14717167,14717274-14717399,14717506-14717625,
14717675-14718463,14718554-14718709,14718800-14718898,
14718989-14719108,14719165-14719251
Length = 1041
Score = 27.1 bits (57), Expect = 6.3
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 177 SMKTGNLTINALQVTNKLSELNYAFT*IIEAMVLYCLHFYLHKPW 43
S KTG LT+N L V + E A T I VL + F + +P+
Sbjct: 377 SDKTGTLTLNKLTVDKNMIEARTAHT--INLSVLPLIFFPIDRPF 419
>01_06_0790 +
32019972-32020101,32020461-32020657,32020790-32020993,
32021444-32021645,32021798-32021886,32022567-32022662,
32022710-32022814,32023516-32023556,32023685-32023777,
32023853-32023970,32024488-32024578,32024693-32024766,
32025008-32025187,32025643-32025681
Length = 552
Score = 27.1 bits (57), Expect = 6.3
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = +1
Query: 52 VQIEMETIKHHGFNNSREGIVQFTQLIRDLXSIDGEVARLHTQIRSHYLPPVSISSSVDT 231
+++ E +KH G ++ Q +L + ++ +R+ +PP+S S + +
Sbjct: 56 MEVVQEVLKH-GSTQGVHAAIRSDQKSYNLVQLIASALDVYNILRNKNVPPLSFSMTQNG 114
Query: 232 SL*NSIKG 255
S +S+KG
Sbjct: 115 STGSSVKG 122
>01_03_0202 - 13762042-13762572
Length = 176
Score = 27.1 bits (57), Expect = 6.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 211 WTQGAGSGFGFEYEDGQP 158
W +G+GSG G+E G+P
Sbjct: 104 WNRGSGSGAGWEDSSGEP 121
>05_01_0322 -
2538320-2538742,2539349-2539521,2539764-2539854,
2540005-2540121,2540327-2540392,2540933-2541025,
2541661-2541721,2542634-2542707,2542782-2542848,
2543342-2543400
Length = 407
Score = 26.6 bits (56), Expect = 8.3
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +2
Query: 146 ALMVRLPVFILKSEATTCPLCPSVLLLTHLCKTVLKVRPXTLLLLVEC*D 295
AL+ LP F LK+ T C CP L H+ V + P VEC D
Sbjct: 235 ALIQELPKFRLKAVPTDCSECPICLEEFHVGNEV-RGLPCAHNFHVECID 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,128,893
Number of Sequences: 37544
Number of extensions: 170691
Number of successful extensions: 510
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -