Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_A18
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    48   9e-07
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    48   9e-07
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   3.2  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   5.6  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    24   9.7  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    24   9.7  

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 47.6 bits (108), Expect = 9e-07
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = +1

Query: 133 RAQCTQVKVEFIGETSRQIIXNVKGPVRDGDIL 231
           R   TQV+VEF+ +TSR II NVKGPVR+ DIL
Sbjct: 23  RGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55



 Score = 32.3 bits (70), Expect = 0.037
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +3

Query: 84  PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 185
           P  LA+V+KVLGRTGS+G V  ++ RV + D  S
Sbjct: 7   PVKLAKVIKVLGRTGSRGGV--TQVRVEFMDDTS 38


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 47.6 bits (108), Expect = 9e-07
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = +1

Query: 133 RAQCTQVKVEFIGETSRQIIXNVKGPVRDGDIL 231
           R   TQV+VEF+ +TSR II NVKGPVR+ DIL
Sbjct: 23  RGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55



 Score = 32.3 bits (70), Expect = 0.037
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +3

Query: 84  PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 185
           P  LA+V+KVLGRTGS+G V  ++ RV + D  S
Sbjct: 7   PVKLAKVIKVLGRTGSRGGV--TQVRVEFMDDTS 38


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 2   FFFSKHASFGARVLIALTLDITSQN 76
           ++FSK+    AR L+A+ + +TS N
Sbjct: 478 YYFSKYTLLAARSLLAIGVGVTSWN 502


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 158 SSSLGRPAVRSSXT*KDPSVTETSSLFLNLNVKL 259
           ++S+  PAV SS T    S+T T S + + +V +
Sbjct: 203 TTSVNSPAVSSSETLTSVSITSTESAYTSSSVDI 236


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 183 TAGLPNELDLHLSTLGPE 130
           TAGLP  +  H++  GPE
Sbjct: 78  TAGLPESIISHMAMYGPE 95


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 186 LTAGLPNELDLHLSTLGPE 130
           L++GL    D H+S LGPE
Sbjct: 272 LSSGLGRVADNHISALGPE 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,635,188
Number of Sequences: 5004
Number of extensions: 28397
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)