Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_A18
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058...    33   0.084
03_01_0468 - 3612079-3612197,3612679-3612850                           31   0.34 
03_02_0892 - 12218803-12218864,12219395-12219740                       27   5.5  
04_04_1090 - 30764340-30764704,30765092-30765204,30765414-307656...    27   9.6  
04_01_0105 + 1098551-1100392                                           27   9.6  
02_05_1291 - 35516715-35517251,35517339-35518185,35518480-355190...    27   9.6  

>10_07_0172 +
           13804803-13805293,13805423-13805537,13805766-13805831,
           13805921-13806009,13806103-13806193,13806312-13806458,
           13806575-13806667,13806745-13806846,13806957-13807541,
           13808523-13808813,13808866-13808937
          Length = 713

 Score = 33.5 bits (73), Expect = 0.084
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -1

Query: 270 SQPPSFTFRFKKSEDVSVTDGSFHVXDDLTAGLPNELDLHLSTLGP 133
           +QPP    R ++ EDV++TD +  V  D T  +  EL   L  L P
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTP 650


>03_01_0468 - 3612079-3612197,3612679-3612850
          Length = 96

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 270 SQPPSFTFRFKKSEDVSVTDGSFHVXDDLTAGLPNELDLHLSTLGP 133
           ++PP      ++ EDV++++ +  V  D T  +  ELD HL  L P
Sbjct: 10  AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELDSHLGHLTP 55


>03_02_0892 - 12218803-12218864,12219395-12219740
          Length = 135

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 25 LWCTCAYCINARYYKPKWINPTFLL 99
          LWC  A C+ A  Y+  W+ P  +L
Sbjct: 17 LWCVGACCLAAYLYRVVWVAPRRVL 41


>04_04_1090 -
           30764340-30764704,30765092-30765204,30765414-30765638,
           30766432-30766553,30766617-30767174,30769207-30769477,
           30772175-30773256
          Length = 911

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 93  LARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHXKRE 203
           L  +V VLG    +G    +EG +  G +PS H  R+
Sbjct: 833 LIGLVPVLGCAARRGAARRAEGDIVGGGKPSSHAPRQ 869


>04_01_0105 + 1098551-1100392
          Length = 613

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 84  PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQ 179
           P++LA VV +LGR G     Y+    +  G+Q
Sbjct: 377 PDILACVVDILGRAGRLDEAYAMVTSMETGEQ 408


>02_05_1291 -
          35516715-35517251,35517339-35518185,35518480-35519009,
          35519092-35519529
          Length = 783

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 3  FFFRNTPALVHVCLLH*RSILQAKMDKPNVLA 98
          FF+  T A   +  LH R++  A+ D PN++A
Sbjct: 3  FFYACTDAFAGLTRLHLRNLKLAETDIPNIIA 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,376,912
Number of Sequences: 37544
Number of extensions: 182704
Number of successful extensions: 385
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)