Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_A18
(459 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58682-1|AAB07066.1| 69|Homo sapiens ribosomal protein S28 pro... 57 3e-08
L05091-1|AAC15855.1| 69|Homo sapiens ribosomal protein S28 pro... 57 3e-08
CR457055-1|CAG33336.1| 69|Homo sapiens RPS28 protein. 57 3e-08
BC070218-1|AAH70218.1| 69|Homo sapiens ribosomal protein S28 p... 57 3e-08
BC070217-1|AAH70217.1| 69|Homo sapiens ribosomal protein S28 p... 57 3e-08
BC021239-1|AAH21239.1| 69|Homo sapiens ribosomal protein S28 p... 57 3e-08
BC000354-1|AAH00354.1| 69|Homo sapiens ribosomal protein S28 p... 57 3e-08
AB061846-1|BAB79484.1| 69|Homo sapiens ribosomal protein S28 p... 57 3e-08
>U58682-1|AAB07066.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 57.2 bits (132), Expect = 3e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +1
Query: 133 RAQCTQVKVEFIGETSRQIIXNVKGPVRDGDILT 234
+ QCTQV+VEF+ +TSR II NVKGPVR+GD+LT
Sbjct: 24 QGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.62
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +3
Query: 81 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 185
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>L05091-1|AAC15855.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 57.2 bits (132), Expect = 3e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +1
Query: 133 RAQCTQVKVEFIGETSRQIIXNVKGPVRDGDILT 234
+ QCTQV+VEF+ +TSR II NVKGPVR+GD+LT
Sbjct: 24 QGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.62
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +3
Query: 81 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 185
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>CR457055-1|CAG33336.1| 69|Homo sapiens RPS28 protein.
Length = 69
Score = 57.2 bits (132), Expect = 3e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +1
Query: 133 RAQCTQVKVEFIGETSRQIIXNVKGPVRDGDILT 234
+ QCTQV+VEF+ +TSR II NVKGPVR+GD+LT
Sbjct: 24 QGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.62
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +3
Query: 81 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 185
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>BC070218-1|AAH70218.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 57.2 bits (132), Expect = 3e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +1
Query: 133 RAQCTQVKVEFIGETSRQIIXNVKGPVRDGDILT 234
+ QCTQV+VEF+ +TSR II NVKGPVR+GD+LT
Sbjct: 24 QGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.62
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +3
Query: 81 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 185
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>BC070217-1|AAH70217.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 57.2 bits (132), Expect = 3e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +1
Query: 133 RAQCTQVKVEFIGETSRQIIXNVKGPVRDGDILT 234
+ QCTQV+VEF+ +TSR II NVKGPVR+GD+LT
Sbjct: 24 QGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.62
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +3
Query: 81 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 185
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>BC021239-1|AAH21239.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 57.2 bits (132), Expect = 3e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +1
Query: 133 RAQCTQVKVEFIGETSRQIIXNVKGPVRDGDILT 234
+ QCTQV+VEF+ +TSR II NVKGPVR+GD+LT
Sbjct: 24 QGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.62
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +3
Query: 81 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 185
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>BC000354-1|AAH00354.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 57.2 bits (132), Expect = 3e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +1
Query: 133 RAQCTQVKVEFIGETSRQIIXNVKGPVRDGDILT 234
+ QCTQV+VEF+ +TSR II NVKGPVR+GD+LT
Sbjct: 24 QGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.62
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +3
Query: 81 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 185
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
>AB061846-1|BAB79484.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 57.2 bits (132), Expect = 3e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +1
Query: 133 RAQCTQVKVEFIGETSRQIIXNVKGPVRDGDILT 234
+ QCTQV+VEF+ +TSR II NVKGPVR+GD+LT
Sbjct: 24 QGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 32.7 bits (71), Expect = 0.62
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +3
Query: 81 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 185
+P LARV KVLGRTGSQG ++ RV + D S
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTS 39
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,577,652
Number of Sequences: 237096
Number of extensions: 962672
Number of successful extensions: 1856
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1856
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -