Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_A18
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    52   3e-07
AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical ...    27   5.0  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 24/35 (68%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
 Frame = +1

Query: 133 RAQCTQVKVEFIGE-TSRQIIXNVKGPVRDGDILT 234
           + QCTQV+VEFI +  +R II NVKGPVR+GDILT
Sbjct: 19  QGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53



 Score = 31.1 bits (67), Expect = 0.40
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +3

Query: 75  MDKPNVLARVVKVLGRTGSQG 137
           MDK   LARV KV+GRTGSQG
Sbjct: 1   MDKLT-LARVTKVIGRTGSQG 20


>AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical
           protein F52C6.3 protein.
          Length = 197

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 176 PAVRSSXT*KDPSVTETSSLFLNLNVKLGGCDRLLQHYCIRL 301
           P   S    +DP   E+S +  NLNVK+    + L H  IR+
Sbjct: 64  PLRESEEVTEDPISVESSEVIGNLNVKVAETQQELHHEGIRI 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,074,695
Number of Sequences: 27780
Number of extensions: 163638
Number of successful extensions: 387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)