Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_A17
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    25   0.63 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.8  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 514 HANXEELFYGIHQLVIKLVNLCLDTNSG 597
           HA+  E +  I Q++I++  LC+ T  G
Sbjct: 252 HADQAEEYKKIQQILIRMNKLCIQTIGG 279


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +3

Query: 315 SSIPGHAEAVISTCFSPSGKKLASGSGDTTVRFWDLNTQTPLHVCKGHXNWVLCISWSPD 494
           +S+ G +   + T  +P G ++   +   T+ F    T T    C    N +  +SW  D
Sbjct: 291 NSVGGESVETVLTVTAPLGAEIEPST--QTIDFGRPATFT----CNVRGNPIKTVSWLKD 344

Query: 495 GKKL 506
           GK L
Sbjct: 345 GKPL 348


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +1

Query: 493 MEKNWHQHANXEELFYGIHQLVIKLVNLCLDTNSG 597
           ++ NW+Q+     +++GI   VI ++       +G
Sbjct: 37  IDANWYQYPPLNPMWHGILGFVIGMLGFVSAMGNG 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,920
Number of Sequences: 438
Number of extensions: 4235
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)