Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_A14
         (324 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal prote...    60   3e-10
AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal pro...    60   3e-10
Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    27   2.3  
U61952-10|AAQ01532.2|  217|Caenorhabditis elegans Hypothetical p...    27   4.1  
Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical pr...    26   5.4  
Z78019-1|CAB01456.1|  662|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z81110-3|CAB03257.1|  323|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 39 protein.
          Length = 51

 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 24/30 (80%), Positives = 27/30 (90%)
 Frame = +3

Query: 99  PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 188
           P   WVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 22  PMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal
           protein L39 protein.
          Length = 51

 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 24/30 (80%), Positives = 27/30 (90%)
 Frame = +3

Query: 99  PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 188
           P   WVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 22  PMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -2

Query: 215 ITFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPAEEWVC--FVSAFWPI-CALIINV 48
           I F T T +   +C S ++ +  I  SV C+  YP  E++   F    W + CA+ I++
Sbjct: 72  IVFLTLTDMSATVCSSIISGVLYIKGSVFCS--YPTFEYIAGGFAINTWCMACAINISL 128


>U61952-10|AAQ01532.2|  217|Caenorhabditis elegans Hypothetical
           protein F42A9.9 protein.
          Length = 217

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 124 AQETLFDITLRGVTGEGQSSSCKLVNVLNV 213
           A   +FD+T+ G   +GQ  +C L+ V+ +
Sbjct: 23  ALSVIFDLTMIGAVKKGQMLNCLLIVVITI 52


>Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical
           protein F53B7.2 protein.
          Length = 572

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -2

Query: 191 LQLELCPSPVTPLSVISNSVSCAHPYPAEEWVCFVSAFWPICALII 54
           L  + C   +T L  +   +   HP+ A+ WV      W I   II
Sbjct: 168 LSTQTCGVYLTVLVSVHRYLGVCHPFRAKRWVSGKPVKWAIIGSII 213


>Z78019-1|CAB01456.1|  662|Caenorhabditis elegans Hypothetical
           protein ZK863.4 protein.
          Length = 662

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = +1

Query: 25  LFKMSAHKTFIINAQIGQKAETKQTHSSAG*GCAQETL-----FDITLRGVTGEGQSSSC 189
           LFK  A+  F   A  G+KA  K+T SSA  G  +  L      DIT   ++ +    + 
Sbjct: 390 LFKYYANFDFTNKAIYGKKAMQKKTLSSAHGGVEESPLMLMDPMDIT-HNISAKVTEDAV 448

Query: 190 KLVNVL 207
           KL+N L
Sbjct: 449 KLLNGL 454


>Z81110-3|CAB03257.1|  323|Caenorhabditis elegans Hypothetical
           protein T01D3.4 protein.
          Length = 323

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 134 VSCAHPYPAEEWVCFVSAFWPICALIINVLWADILNNQ 21
           V C     +   +C +S FW   A+++N L+  +L N+
Sbjct: 49  VLCLSKSISNSIICIISLFWVGPAILLNNLFLPLLINK 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,134,014
Number of Sequences: 27780
Number of extensions: 86343
Number of successful extensions: 215
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)