Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_A11
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    48   4e-07
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    44   9e-06
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    26   2.6  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    25   4.5  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 48.4 bits (110), Expect = 4e-07
 Identities = 24/38 (63%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
 Frame = +1

Query: 88  KTF*LTARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTL 198
           K F   ARRKDA S +IKKN  ++VKFK+RCS++LYTL
Sbjct: 9   KQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTL 46



 Score = 27.9 bits (59), Expect = 0.63
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 200 LITDKEKAXKLKQSLPPGL 256
           ++ D +KA KL+QSLPP L
Sbjct: 47  VVADAKKAEKLRQSLPPDL 65


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 44.0 bits (99), Expect = 9e-06
 Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +1

Query: 88  KTF*LTARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTL 198
           K F   A R DA S ++KKN    VKFK+RCSR+LYTL
Sbjct: 9   KLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTL 46



 Score = 28.3 bits (60), Expect = 0.48
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 200 LITDKEKAXKLKQSLPPGL 256
           ++ D +KA KL+QSLPP L
Sbjct: 47  VVADAKKAEKLRQSLPPAL 65


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 218 SLCQ**ARVYRNLEHRTLNLTFSGFFFILTDLASF 114
           SLC   + +Y     R  NL  +GFFF+L  + SF
Sbjct: 344 SLC---SGLYMKKTGRYRNLVIAGFFFMLMGIVSF 375


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 155 FSGFFFILTDLASFLL 108
           F GFFFIL  L SFL+
Sbjct: 17  FWGFFFILFPLVSFLM 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,055,420
Number of Sequences: 5004
Number of extensions: 17015
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)