Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_A11
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     61   3e-10
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     58   3e-09
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    58   3e-09
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    27   5.6  
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928...    27   5.6  
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464...    27   7.5  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = +1

Query: 88  KTF*LTARRKDAKSVKIKKNPENVKFKVRCSRFLYTLAHH 207
           K F LTARRKDA+SV+IK++ + VKFKVRCSR+LYTL  H
Sbjct: 9   KDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVH 48



 Score = 32.3 bits (70), Expect = 0.15
 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 7/50 (14%)
 Frame = +2

Query: 128 RSK*RRTLRMSSSRFDA---QGSCTPWLIT----DKEKAXKLKQSLPPGL 256
           R K  R++R+  S+ DA   +  C+ +L T    D +KA KLKQSLPPGL
Sbjct: 16  RRKDARSVRIKRSK-DAVKFKVRCSRYLYTLCVHDTDKANKLKQSLPPGL 64


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 57.6 bits (133), Expect = 3e-09
 Identities = 26/37 (70%), Positives = 32/37 (86%)
 Frame = +1

Query: 88  KTF*LTARRKDAKSVKIKKNPENVKFKVRCSRFLYTL 198
           K F LTARRKDA+SV+IK+  + VKFKVRCS++LYTL
Sbjct: 9   KDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTL 45



 Score = 31.5 bits (68), Expect = 0.26
 Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
 Frame = +2

Query: 188 CTPWLIT----DKEKAXKLKQSLPPGL 256
           C+ +L T    D +KA KLKQSLPPGL
Sbjct: 38  CSKYLYTLCVFDADKANKLKQSLPPGL 64


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 57.6 bits (133), Expect = 3e-09
 Identities = 26/37 (70%), Positives = 32/37 (86%)
 Frame = +1

Query: 88  KTF*LTARRKDAKSVKIKKNPENVKFKVRCSRFLYTL 198
           K F LTARRKDA+SV+IK+  + VKFKVRCS++LYTL
Sbjct: 39  KDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTL 75



 Score = 31.5 bits (68), Expect = 0.26
 Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
 Frame = +2

Query: 188 CTPWLIT----DKEKAXKLKQSLPPGL 256
           C+ +L T    D +KA KLKQSLPPGL
Sbjct: 68  CSKYLYTLCVFDADKANKLKQSLPPGL 94


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +3

Query: 42  ENYSSSTCRAEIKDIKDFLINGEEERRQIGQNKEE 146
           E+ SS+  +A  ++ K  LING+E+++Q  + +EE
Sbjct: 22  EDDSSNLLQARGRNKKHALINGDEQQQQQEEEEEE 56


>02_05_0717 +
           31190626-31191234,31191954-31192394,31192699-31192802,
           31193000-31194384,31194508-31194548,31195065-31195133,
           31195335-31195435,31195747-31195825,31195939-31196037,
           31196119-31196187,31197609-31197658,31197749-31197925,
           31198045-31198152,31198224-31198290
          Length = 1132

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 66  RAEIKDIKDFLINGEEERRQIGQNKEE 146
           R ++KDI +++IN  +E  Q+ Q   E
Sbjct: 544 RMKVKDISEYMINAAKENPQLAQKIHE 570


>02_05_0844 -
           32144417-32144764,32145588-32145686,32146218-32146410,
           32147049-32147107,32147189-32147263,32147557-32147670,
           32147776-32147895,32148204-32148216,32148421-32148512,
           32149078-32149164,32149254-32149328,32149630-32149680,
           32149852-32149947,32150135-32150221,32150312-32150368,
           32150475-32150600,32150709-32150949,32151028-32151114,
           32151260-32151637,32152847-32153187
          Length = 912

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 146 TLRMSSSRFDAQGSCTPWLITDKEKAXKLKQSL 244
           T RM SS+F+  GSC   LI D+    K  Q+L
Sbjct: 357 TFRMHSSKFERPGSC-DLLICDEAHRLKNDQTL 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,640,897
Number of Sequences: 37544
Number of extensions: 100748
Number of successful extensions: 207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)