Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_A11
         (405 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.      68   1e-11
BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38 p...    68   1e-11
AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38 p...    38   0.010
U02390-1|AAA20587.1|  477|Homo sapiens CAP2 protein.                   30   3.4  
CR457022-1|CAG33303.1|  477|Homo sapiens CAP2 protein.                 30   3.4  
BC008481-1|AAH08481.1|  477|Homo sapiens CAP, adenylate cyclase-...    30   3.4  
AL138824-4|CAI12250.1|  474|Homo sapiens CAP, adenylate cyclase-...    30   3.4  
AL034372-3|CAC26824.2|  474|Homo sapiens CAP, adenylate cyclase-...    30   3.4  

>Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.
          Length = 70

 Score = 68.1 bits (159), Expect = 1e-11
 Identities = 32/37 (86%), Positives = 34/37 (91%)
 Frame = +1

Query: 88  KTF*LTARRKDAKSVKIKKNPENVKFKVRCSRFLYTL 198
           K F LTARRKDAKSVKIKKN +NVKFKVRCSR+LYTL
Sbjct: 9   KDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTL 45



 Score = 38.3 bits (85), Expect = 0.010
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 200 LITDKEKAXKLKQSLPPGL 256
           +ITDKEKA KLKQSLPPGL
Sbjct: 46  VITDKEKAEKLKQSLPPGL 64


>BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38
           protein.
          Length = 70

 Score = 68.1 bits (159), Expect = 1e-11
 Identities = 32/37 (86%), Positives = 34/37 (91%)
 Frame = +1

Query: 88  KTF*LTARRKDAKSVKIKKNPENVKFKVRCSRFLYTL 198
           K F LTARRKDAKSVKIKKN +NVKFKVRCSR+LYTL
Sbjct: 9   KDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTL 45



 Score = 38.3 bits (85), Expect = 0.010
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 200 LITDKEKAXKLKQSLPPGL 256
           +ITDKEKA KLKQSLPPGL
Sbjct: 46  VITDKEKAEKLKQSLPPGL 64


>AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38
           protein.
          Length = 37

 Score = 38.3 bits (85), Expect = 0.010
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 200 LITDKEKAXKLKQSLPPGL 256
           +ITDKEKA KLKQSLPPGL
Sbjct: 13  VITDKEKAEKLKQSLPPGL 31



 Score = 28.7 bits (61), Expect = 7.8
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +1

Query: 163 FKVRCSRFLYTL 198
           FKVRCSR+LYTL
Sbjct: 1   FKVRCSRYLYTL 12


>U02390-1|AAA20587.1|  477|Homo sapiens CAP2 protein.
          Length = 477

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 279 HHFTSLTWRPGGKLCLSXSAFSLSVMSQGVQEP 181
           HH T LTW   G +  + SAFS+     G+  P
Sbjct: 202 HHTTGLTWSKTGPVASTVSAFSVLSSGPGLPPP 234


>CR457022-1|CAG33303.1|  477|Homo sapiens CAP2 protein.
          Length = 477

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 279 HHFTSLTWRPGGKLCLSXSAFSLSVMSQGVQEP 181
           HH T LTW   G +  + SAFS+     G+  P
Sbjct: 202 HHTTGLTWSKTGPVASTVSAFSVLSSGPGLPPP 234


>BC008481-1|AAH08481.1|  477|Homo sapiens CAP, adenylate
           cyclase-associated protein, 2 (yeast) protein.
          Length = 477

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 279 HHFTSLTWRPGGKLCLSXSAFSLSVMSQGVQEP 181
           HH T LTW   G +  + SAFS+     G+  P
Sbjct: 202 HHTTGLTWSKTGPVASTVSAFSVLSSGPGLPPP 234


>AL138824-4|CAI12250.1|  474|Homo sapiens CAP, adenylate
           cyclase-associated protein, 2 (yeast) protein.
          Length = 474

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 279 HHFTSLTWRPGGKLCLSXSAFSLSVMSQGVQEP 181
           HH T LTW   G +  + SAFS+     G+  P
Sbjct: 199 HHTTGLTWSKTGPVASTVSAFSVLSSGPGLPPP 231


>AL034372-3|CAC26824.2|  474|Homo sapiens CAP, adenylate
           cyclase-associated protein, 2 (yeast) protein.
          Length = 474

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 279 HHFTSLTWRPGGKLCLSXSAFSLSVMSQGVQEP 181
           HH T LTW   G +  + SAFS+     G+  P
Sbjct: 199 HHTTGLTWSKTGPVASTVSAFSVLSSGPGLPPP 231


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,826,713
Number of Sequences: 237096
Number of extensions: 563818
Number of successful extensions: 1197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2985693880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)