Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_A11
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...    58   2e-09
AL021497-10|CAD56614.1|  490|Caenorhabditis elegans Hypothetical...    27   3.9  
AL021497-9|CAA16397.1|  487|Caenorhabditis elegans Hypothetical ...    27   3.9  
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr...    26   9.0  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 27/37 (72%), Positives = 30/37 (81%)
 Frame = +1

Query: 88  KTF*LTARRKDAKSVKIKKNPENVKFKVRCSRFLYTL 198
           K F + ARRKDAKSVKIKKN  N KFKVRC+ +LYTL
Sbjct: 9   KDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTL 45



 Score = 35.9 bits (79), Expect = 0.011
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +2

Query: 200 LITDKEKAXKLKQSLPPGLQ 259
           ++ DK+KA KLKQSLPPG+Q
Sbjct: 46  VVADKDKAEKLKQSLPPGIQ 65


>AL021497-10|CAD56614.1|  490|Caenorhabditis elegans Hypothetical
           protein Y51A2D.13b protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 135 NKEEP*ECQVQGSMLKVPV--HPGSSLTKRRLXNLSRVYLQVSKLKK*SDV 281
           NKE P E QVQG+  +V +   P      RR  +L  +  ++   KK  D+
Sbjct: 253 NKEYPLEMQVQGAKAQVYIATSPKELNNPRRTWDLDAIVSEIDAAKKFIDI 303


>AL021497-9|CAA16397.1|  487|Caenorhabditis elegans Hypothetical
           protein Y51A2D.13a protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 135 NKEEP*ECQVQGSMLKVPV--HPGSSLTKRRLXNLSRVYLQVSKLKK*SDV 281
           NKE P E QVQG+  +V +   P      RR  +L  +  ++   KK  D+
Sbjct: 250 NKEYPLEMQVQGAKAQVYIATSPKELNNPRRTWDLDAIVSEIDAAKKFIDI 300


>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical protein
            F57C7.1a protein.
          Length = 1209

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 140  RRTLRMSSSRFDAQGSCTPWLITDKEKAXKLKQSLPP 250
            +RTL  SSS  D+ GS +    +D E   + K+  PP
Sbjct: 1060 KRTLSESSSSSDSNGSSSDSSDSDSEPKPQAKKPEPP 1096


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,870,441
Number of Sequences: 27780
Number of extensions: 94148
Number of successful extensions: 219
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)