Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_A04
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 169 4e-43
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 169 4e-43
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 109 4e-25
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 109 4e-25
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 109 4e-25
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 69 5e-13
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 39 6e-04
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 39 6e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 38 0.001
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 30 0.23
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 2.8
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 2.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 6.4
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 8.5
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi... 25 8.5
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 169 bits (410), Expect = 4e-43
Identities = 82/134 (61%), Positives = 96/134 (71%)
Frame = +3
Query: 90 LQVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXX 269
L+VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
Query: 270 XXXXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAV 449
Y+TP LAVL++YKV+++G + RLRREC CGA FMA
Sbjct: 75 GGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMAN 132
Query: 450 MEDRHYCGKCHSTM 491
+DR YCG+CH T+
Sbjct: 133 HKDRLYCGRCHLTL 146
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 59 VKTLTGKTITL 91
VKTLTGKTITL
Sbjct: 5 VKTLTGKTITL 15
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 169 bits (410), Expect = 4e-43
Identities = 82/134 (61%), Positives = 96/134 (71%)
Frame = +3
Query: 90 LQVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXX 269
L+VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
Query: 270 XXXXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAV 449
Y+TP LAVL++YKV+++G + RLRREC CGA FMA
Sbjct: 75 GGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMAN 132
Query: 450 MEDRHYCGKCHSTM 491
+DR YCG+CH T+
Sbjct: 133 HKDRLYCGRCHLTL 146
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 59 VKTLTGKTITL 91
VKTLTGKTITL
Sbjct: 5 VKTLTGKTITL 15
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 109 bits (261), Expect = 4e-25
Identities = 51/56 (91%), Positives = 55/56 (98%)
Frame = +3
Query: 90 LQVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 257
L+VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 59 VKTLTGKTITL 91
VKTLTGKTITL
Sbjct: 5 VKTLTGKTITL 15
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 109 bits (261), Expect = 4e-25
Identities = 51/56 (91%), Positives = 55/56 (98%)
Frame = +3
Query: 90 LQVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 257
L+VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 59 VKTLTGKTITL 91
VKTLTGKTITL
Sbjct: 5 VKTLTGKTITL 15
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 109 bits (261), Expect = 4e-25
Identities = 51/56 (91%), Positives = 55/56 (98%)
Frame = +3
Query: 90 LQVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 257
L+VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 109 bits (261), Expect = 4e-25
Identities = 51/56 (91%), Positives = 55/56 (98%)
Frame = +3
Query: 90 LQVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 257
L+VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 91 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 109 bits (261), Expect = 4e-25
Identities = 51/56 (91%), Positives = 55/56 (98%)
Frame = +3
Query: 90 LQVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 257
L+VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 167 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 109 bits (261), Expect = 4e-25
Identities = 51/56 (91%), Positives = 55/56 (98%)
Frame = +3
Query: 90 LQVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 257
L+VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 243 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 109 bits (261), Expect = 4e-25
Identities = 51/56 (91%), Positives = 55/56 (98%)
Frame = +3
Query: 90 LQVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 257
L+VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 319 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 59 VKTLTGKTITL 91
VKTLTGKTITL
Sbjct: 5 VKTLTGKTITL 15
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 59 VKTLTGKTITL 91
VKTLTGKTITL
Sbjct: 81 VKTLTGKTITL 91
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 59 VKTLTGKTITL 91
VKTLTGKTITL
Sbjct: 157 VKTLTGKTITL 167
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 59 VKTLTGKTITL 91
VKTLTGKTITL
Sbjct: 233 VKTLTGKTITL 243
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 59 VKTLTGKTITL 91
VKTLTGKTITL
Sbjct: 309 VKTLTGKTITL 319
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 68.9 bits (161), Expect = 5e-13
Identities = 26/56 (46%), Positives = 42/56 (75%)
Frame = +3
Query: 90 LQVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 257
L ++P+D + +K ++++KEGIPP+QQRLI+AGKQ+ D + Y+++ S LHLV
Sbjct: 15 LDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 38.7 bits (86), Expect = 6e-04
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +3
Query: 90 LQVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 248
L++EP++T +K ++ +PP +Q++I G QL+D L I+ +TL
Sbjct: 15 LEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 38.7 bits (86), Expect = 6e-04
Identities = 17/46 (36%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +3
Query: 105 SDT-IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 239
+DT I +K KIQ ++ +Q+LI++G+ L D +T+ +YNI+++
Sbjct: 20 ADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +3
Query: 96 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 257
V+ ++ +K I I +QRLI+AG+ L+D +L Y IQ ++HLV
Sbjct: 20 VDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLV 73
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 30.3 bits (65), Expect = 0.23
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 575 YLNPSYTAVASVPYRLEGTYLXVVVFEDHRAMTLPAV 465
++NP+YT Y L TYL F++HR + AV
Sbjct: 142 HINPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 237 PSGYCSPRGYVHLPAAFQQRSTSVDWEGF 151
PS + PRG V+ P+ ++R + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 351 VLRFY-KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 509
V+R Y ++ +N + R C E F V++D H KC + ++ D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -1
Query: 75 PVRVFTENLHLHSPYAVTIPAR 10
P+ +F N+HL +P+A +P++
Sbjct: 3957 PLWLFINNIHLSTPWAEKLPSK 3978
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 159 PNQQRLIFAGKQLEDGRTLSDYNI 230
PNQ AGK+L+ R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499
>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
Hub1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 73
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 102 PSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 254
P DT+ + K + + G P + L +D TL+DY I +L +
Sbjct: 20 PDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYEIHDGMSLEM 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,668
Number of Sequences: 5004
Number of extensions: 40913
Number of successful extensions: 113
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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