Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P24
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   182   3e-47
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   182   3e-47
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    45   7e-06
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   4.4  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    25   7.7  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   7.7  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  182 bits (443), Expect = 3e-47
 Identities = 84/130 (64%), Positives = 106/130 (81%)
 Frame = +2

Query: 50  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 229
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 230 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVADPRR 409
           DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+V E SK E+K  L  YDR+LLVADPRR
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 410 CEPKKFGGPG 439
            EPKKFGG G
Sbjct: 121 MEPKKFGGHG 130


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  182 bits (443), Expect = 3e-47
 Identities = 84/130 (64%), Positives = 106/130 (81%)
 Frame = +2

Query: 50  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 229
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 230 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVADPRR 409
           DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+V E SK E+K  L  YDR+LLVADPRR
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 410 CEPKKFGGPG 439
            EPKKFGG G
Sbjct: 121 MEPKKFGGHG 130


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 45.2 bits (102), Expect = 7e-06
 Identities = 37/122 (30%), Positives = 56/122 (45%)
 Frame = +2

Query: 71  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 250
           G++K++ A      G G   VNG P D+   R++  K      L    + +  ++  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 251 GGGHVAQVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVADPRRCEPKKFG 430
           GGG   Q  A+  AISK+LI      + E S K++       D   ++ D R+ E KK G
Sbjct: 71  GGGPTGQSGAVHAAISKSLI------LQEPSLKQVIK-----DTHCVLNDKRKVERKKTG 119

Query: 431 GP 436
            P
Sbjct: 120 QP 121


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 450 DTXNLTVKPSXKPSGGIVAASCCH 521
           D  N+ VKP+  P+  +    CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 6   SLSKWLLCRRQDVSPSRPSKYSDVRKPPP 92
           S+S  +L +++     RPS +S+++KP P
Sbjct: 487 SISSSILTQQRQFHTFRPSFHSEIKKPLP 515


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 137  RLHAAFHDHACNTQLRWRFS 78
            RLH+ F++H C + L+  FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,110
Number of Sequences: 5004
Number of extensions: 43766
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)