Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P24
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             147   6e-36
SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   3e-04
SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)               32   0.28 
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)                   30   1.1  
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        29   2.0  
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.6  
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  147 bits (356), Expect = 6e-36
 Identities = 68/87 (78%), Positives = 78/87 (89%)
 Frame = +2

Query: 179 KLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVXEASKKEIK 358
           K++EPILLLGKE+F  VDIRV VKGGGH +++YAIRQAISK+L+A+YQKYV E SKKEI+
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIR 70

Query: 359 DILXQYDRSLLVADPRRCEPKKFGGPG 439
           DIL QYDRSLLVADPRR E KKFGGPG
Sbjct: 71  DILVQYDRSLLVADPRRTEAKKFGGPG 97


>SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 34/99 (34%), Positives = 48/99 (48%)
 Frame = +2

Query: 71  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 250
           G +K + A A+  +G G + VN RP      RL Q K Q        +     D    V 
Sbjct: 338 GYRKRSVAKAWVMKGSGKITVNDRPFVEYFSRL-QDKQQILFPFQVVDCVGQFDASCHVL 396

Query: 251 GGGHVAQVYAIRQAISKALIAFYQKYVXEASKKEIKDIL 367
           GGG   Q  AIR AIS+AL+ F + ++ E  ++EI + L
Sbjct: 397 GGGLTGQAGAIRLAISRALLNFSEDHL-EPLQEEIPESL 434


>SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)
          Length = 391

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +2

Query: 230 DIRVTVKGGGHVAQVYAIRQAISKALIAF 316
           DI+V V GGG   Q  AI+  I++ALI F
Sbjct: 323 DIKVNVHGGGESGQAGAIKHGITRALIDF 351


>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
          Length = 513

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +1

Query: 256 WSCSTSLRYQTSYFK-GSDRLLPEI 327
           WSCSTS+R +TS FK GS  LL  +
Sbjct: 155 WSCSTSMRNRTSIFKAGSVPLLARL 179


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 305 LIAFYQKYVXEASKKEIKDILXQYDRSLLVADPRRCE 415
           ++AF QKY+    +KE      Q+ + +LV+  R CE
Sbjct: 53  VLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 223 REFFLAEQKDRFLKFVLQQSGLNQ--VQWAP 137
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 115 SWNAACKRAPIGLG*AQTAAVQTSGTYPFARQGKILYG 228
           SW  A K+ P G G  ++     +G Y   R G+  YG
Sbjct: 19  SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,673,770
Number of Sequences: 59808
Number of extensions: 371951
Number of successful extensions: 995
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)