Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_P24
(568 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 234 2e-61
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 234 2e-61
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 234 2e-61
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 234 2e-61
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 136 4e-32
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 107 2e-23
BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal... 49 1e-05
BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein. 49 1e-05
Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex late... 31 2.8
BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for IM... 31 2.8
BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex pr... 31 2.8
BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex pr... 31 2.8
BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein. 31 2.8
AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex pr... 31 2.8
AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex pr... 31 2.8
AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex p... 31 2.8
AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex pr... 31 2.8
AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein pr... 31 2.8
AK126054-1|BAC86416.1| 926|Homo sapiens protein ( Homo sapiens ... 29 8.6
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 234 bits (572), Expect = 2e-61
Identities = 106/131 (80%), Positives = 124/131 (94%)
Frame = +2
Query: 47 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 226
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 227 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVADPR 406
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYV EASKKEIKDIL QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 407 RCEPKKFGGPG 439
RCE KKFGGPG
Sbjct: 126 RCESKKFGGPG 136
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 234 bits (572), Expect = 2e-61
Identities = 106/131 (80%), Positives = 124/131 (94%)
Frame = +2
Query: 47 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 226
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 227 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVADPR 406
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYV EASKKEIKDIL QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 407 RCEPKKFGGPG 439
RCE KKFGGPG
Sbjct: 126 RCESKKFGGPG 136
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 234 bits (572), Expect = 2e-61
Identities = 106/131 (80%), Positives = 124/131 (94%)
Frame = +2
Query: 47 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 226
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 227 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVADPR 406
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYV EASKKEIKDIL QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 407 RCEPKKFGGPG 439
RCE KKFGGPG
Sbjct: 126 RCESKKFGGPG 136
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 234 bits (572), Expect = 2e-61
Identities = 106/131 (80%), Positives = 124/131 (94%)
Frame = +2
Query: 47 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 226
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 227 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVADPR 406
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYV EASKKEIKDIL QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 407 RCEPKKFGGPG 439
RCE KKFGGPG
Sbjct: 126 RCESKKFGGPG 136
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 136 bits (330), Expect = 4e-32
Identities = 60/83 (72%), Positives = 75/83 (90%)
Frame = +2
Query: 47 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 226
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 227 VDIRVTVKGGGHVAQVYAIRQAI 295
VDIRV VKGGGHVAQ+Y Q +
Sbjct: 66 VDIRVRVKGGGHVAQIYGESQEL 88
Score = 33.1 bits (72), Expect = 0.70
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 312 PSTRNMXTKPQRRKSKTSXYNTIGVCW 392
P TRNM + RR+SKTS + G CW
Sbjct: 126 PITRNMWMRLPRRRSKTSSSSMTGPCW 152
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 107 bits (258), Expect = 2e-23
Identities = 56/108 (51%), Positives = 74/108 (68%)
Frame = +2
Query: 50 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 229
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 230 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQ 373
DI V VKG GHV Q+YA+ Q ISKAL+ Y KYV EAS +EIKD L +
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEAS-EEIKDTLTR 124
>BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal
protein S9 protein.
Length = 396
Score = 49.2 bits (112), Expect = 1e-05
Identities = 44/124 (35%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Frame = +2
Query: 71 GRKKTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 247
G++KTA A A K G G ++VNG L P + Q + Q ++ D+ TV
Sbjct: 274 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 332
Query: 248 KGGGHVAQVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVADPRRCEPKKF 427
GGG AQ AIR A++KAL +F V E ++ LL DPR E KK
Sbjct: 333 SGGGRSAQAGAIRLAMAKALCSF----VTE------DEVEWMRQAGLLTTDPRVRERKKP 382
Query: 428 GGPG 439
G G
Sbjct: 383 GQEG 386
>BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein.
Length = 302
Score = 49.2 bits (112), Expect = 1e-05
Identities = 44/124 (35%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Frame = +2
Query: 71 GRKKTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 247
G++KTA A A K G G ++VNG L P + Q + Q ++ D+ TV
Sbjct: 180 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 238
Query: 248 KGGGHVAQVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVADPRRCEPKKF 427
GGG AQ AIR A++KAL +F V E ++ LL DPR E KK
Sbjct: 239 SGGGRSAQAGAIRLAMAKALCSF----VTE------DEVEWMRQAGLLTTDPRVRERKKP 288
Query: 428 GGPG 439
G G
Sbjct: 289 GQEG 292
>Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex lateral
element protein protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for
IMAGE:8860302) protein.
Length = 792
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 338 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 381
>BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein.
Length = 1024
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein
protein.
Length = 520
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 269 QVYAIRQAISKALIAFYQKYVXEASKKEIKDILXQYDRSLLVAD 400
Q+Y+I SK L+ K + SK+E K++L +D SL + +
Sbjct: 61 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 104
>AK126054-1|BAC86416.1| 926|Homo sapiens protein ( Homo sapiens
cDNA FLJ44066 fis, clone TESTI4036909, weakly similar
to Regulator of nonsense transcripts 1. ).
Length = 926
Score = 29.5 bits (63), Expect = 8.6
Identities = 18/80 (22%), Positives = 34/80 (42%)
Frame = +2
Query: 125 LRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKA 304
L P + R+ + K P KF ++ + T+K + QV+ + + + A
Sbjct: 385 LLTTSSPTIVSNKRVSKRKFIPPAFTNVSTKFELLSLGATLKLASELIQVHKLNKDQATA 444
Query: 305 LIAFYQKYVXEASKKEIKDI 364
LI Q S +E+K++
Sbjct: 445 LIQIAQMMASHESIEEVKEL 464
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,033,120
Number of Sequences: 237096
Number of extensions: 1927711
Number of successful extensions: 4435
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4435
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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