Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P21
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    82   6e-17
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    31   0.19 
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    28   1.3  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    27   2.3  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    26   5.3  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   7.1  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 82.2 bits (194), Expect = 6e-17
 Identities = 52/130 (40%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
 Frame = -1

Query: 507 VKMSSSLNWMIIRNNNAFLVKKXNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 331
           + +S+ L W +IR+NN FLVK+       F++EP NV+  ++ R++GL + KAVGV  N 
Sbjct: 1   MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60

Query: 330 DRKGFTVVYKKAKXTRKPAKNLIRRPFKAGA-RRSLYK-VKRLLKXNHYRTDLCKXTLXR 157
            R    +     K  +KPAK L R+   A A  R  YK +   +    YR DL K ++ R
Sbjct: 61  PRGVVLITKTNPKNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVAR 119

Query: 156 XSAILRSQRP 127
            SAIL SQRP
Sbjct: 120 ASAILSSQRP 129


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 304 VHYCESLPVRVLHDTNGFLVNQXVVPEGVEVSHIVRLLAERLFDIALLH 450
           +HYC S  +  LHDT   LV       G + S +++     + D  L H
Sbjct: 251 IHYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIKKTISLMIDGRLHH 299


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 515 TYFYTKHNVLTMCAXTKRHGNMIKFKSTKWSFTFNKTNYF 634
           TY YTKH  L + A TK + N++       S   + T+YF
Sbjct: 53  TYIYTKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYF 92


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +2

Query: 443 FFTRNALLLRMIIQFSDDDIFTV*TYFYTKHNVLTMCAXTKRHGNMIK 586
           FFT ++L     +  S   I     Y Y  HN+LT+C   K     +K
Sbjct: 449 FFTVSSLFFTRFVNESLIPILRNDYYVYLSHNLLTVCNIIKAQFQRLK 496


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 495 SSLNWMIIRNNNAFLVKKXNIKKPFSKEPNNVTNLH 388
           S ++ + + NNN ++V + +I+ P+S    +   LH
Sbjct: 415 SQVHSLYLSNNNPYMVLQPDIQSPYSLIAYHANGLH 450


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 252 MDGGLSF*RAFWXPLLSCTLL*IPSCQGSP 341
           ++GGLS        LL C+++ I SCQG P
Sbjct: 531 IEGGLSM---IVDALLICSIIDISSCQGDP 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,930
Number of Sequences: 5004
Number of extensions: 41045
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)