Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_P21
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022) 52 4e-07
SB_58485| Best HMM Match : COX2 (HMM E-Value=0) 30 1.9
SB_14168| Best HMM Match : COX2 (HMM E-Value=0) 30 1.9
SB_12233| Best HMM Match : COX2 (HMM E-Value=0) 30 1.9
SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7) 29 3.2
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14) 28 7.5
SB_54034| Best HMM Match : Tctex-1 (HMM E-Value=7.5) 28 7.5
SB_33294| Best HMM Match : No HMM Matches (HMM E-Value=.) 24 8.0
SB_56125| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_14488| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09) 27 9.9
>SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)
Length = 90
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/75 (36%), Positives = 39/75 (52%)
Frame = -1
Query: 351 VGVVENPDRKGFTVVYKKAKXTRKPAKNLIRRPFKAGARRSLYKVKRLLKXNHYRTDLCK 172
VGV P KG + +K K KP K + + +RR+L ++ + N+YR DL
Sbjct: 2 VGVDAAPSGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKD 61
Query: 171 XTLXRXSAILRSQRP 127
+ R AILRSQ+P
Sbjct: 62 PAMRRACAILRSQKP 76
>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
Length = 239
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +3
Query: 588 LNLQNGASPLIKQIIFFHD 644
L+LQ+ A P++++IIFFHD
Sbjct: 15 LSLQDAAHPVMEEIIFFHD 33
>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
Length = 239
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +3
Query: 588 LNLQNGASPLIKQIIFFHD 644
L+LQ+ A P++++IIFFHD
Sbjct: 15 LSLQDAAHPVMEEIIFFHD 33
>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
Length = 219
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +3
Query: 588 LNLQNGASPLIKQIIFFHD 644
L+LQ+ A P++++IIFFHD
Sbjct: 15 LSLQDAAHPVMEEIIFFHD 33
>SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7)
Length = 1223
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 513 KPISTPNTTCSQCVRXQKGMAT*SNLNLQNGASPL 617
+P+ TP T+ Q R KG + ++NG PL
Sbjct: 1045 RPVPTPRTSIKQTRRALKGYTMSFEIGIKNGRDPL 1079
>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
Length = 480
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = -1
Query: 447 KKXNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKXTRKPAKN 268
+K ++KK N + +R N ++KK E+P + ++YK + TRKP +
Sbjct: 10 EKFDMKKNEPAPIANKYKAYLYRTNKQMNKKQ----EHPVTQRKQMIYKPGRMTRKPGRL 65
Query: 267 LIRRPFKAGARRS 229
+ RR + + S
Sbjct: 66 VTRRTSRVTLKTS 78
>SB_54034| Best HMM Match : Tctex-1 (HMM E-Value=7.5)
Length = 255
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 477 IIRNNNAFLVKKXNIKKPFSKEPNNVT-NLHSFRYNGLIHKKAVGVVENPDRKGFT 313
++ + + FL K PF+ + +V LH +G ++ AV VE R+GFT
Sbjct: 9 LVSSPSDFLCKTIPFSTPFATDSVHVQITLHMDEQSGPTYEAAVNWVEQVCREGFT 64
>SB_33294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 983
Score = 24.2 bits (50), Expect(2) = 8.0
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -3
Query: 238 QEVTVQSEEVVKG*PLPHRPMQGYPXSXFSHPPXPEAHQ 122
Q+V Q + V P P+Q YP HPP + Q
Sbjct: 843 QQVWQQQQPVAS--PQGLNPLQTYPQQQQPHPPYTQPRQ 879
Score = 21.8 bits (44), Expect(2) = 8.0
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = -3
Query: 391 PLLQVQRXDSQESRWCRGEP*QEGIHSSVQESKGYQKAR*KL 266
P+ + S +W QEGI + Q+ + Q R +L
Sbjct: 771 PINSMSNNTSTSQQWANNNWQQEGIQTQQQQQERQQLQRRQL 812
>SB_56125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -3
Query: 208 VKG*PLPHR----PMQGYPXSXFSHPPXPEAHQSKKG 110
V+G P P + P QGYP +PP + +Q+ G
Sbjct: 38 VQGYPPPQQGYPPPQQGYPAQQQGYPPAQQGYQTTGG 74
>SB_14488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 513 KPISTPNTTCSQCVRXQKGMAT*SNLNLQNGASPL 617
KP+ TP T +Q R KG + ++N PL
Sbjct: 76 KPVPTPKTKIAQTRRALKGYTKSFEIGIKNSRDPL 110
>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
Length = 720
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 289 YQKAR*KLNPPSIQGWCQEVTV 224
YQK LNP S GWC+ V V
Sbjct: 451 YQKDPCVLNPCSSHGWCEAVNV 472
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,873,590
Number of Sequences: 59808
Number of extensions: 327669
Number of successful extensions: 796
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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