Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P21
         (645 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457024-1|CAG33305.1|  137|Homo sapiens RPL28 protein.               120   4e-27
BC011582-1|AAH11582.1|  137|Homo sapiens ribosomal protein L28 p...   120   4e-27
BC010182-1|AAH10182.1|  137|Homo sapiens ribosomal protein L28 p...   120   4e-27
BC010173-1|AAH10173.1|  137|Homo sapiens ribosomal protein L28 p...   120   4e-27
U14969-1|AAA85657.1|  137|Homo sapiens ribosomal protein L28 pro...   119   1e-26
AB209627-1|BAD92864.1|   95|Homo sapiens ribosomal protein L28 v...    75   2e-13
AB007179-1|BAA25838.1|   53|Homo sapiens ribosomal protein L28 p...    43   0.001

>CR457024-1|CAG33305.1|  137|Homo sapiens RPL28 protein.
          Length = 137

 Score =  120 bits (289), Expect = 4e-27
 Identities = 57/126 (45%), Positives = 81/126 (64%)
 Frame = -1

Query: 501 MSSSLNWMIIRNNNAFLVKKXNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 322
           MS+ L WM++RN ++FL+K+   K+ +S EPNN+   +SFRYNGLIH+K VGV    D K
Sbjct: 1   MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query: 321 GFTVVYKKAKXTRKPAKNLIRRPFKAGARRSLYKVKRLLKXNHYRTDLCKXTLXRXSAIL 142
           G  VV K+    RKPA + +R      AR +L  ++ +++ N YR DL    + R SAIL
Sbjct: 59  GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118

Query: 141 RSQRPI 124
           RSQ+P+
Sbjct: 119 RSQKPV 124


>BC011582-1|AAH11582.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score =  120 bits (289), Expect = 4e-27
 Identities = 57/126 (45%), Positives = 81/126 (64%)
 Frame = -1

Query: 501 MSSSLNWMIIRNNNAFLVKKXNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 322
           MS+ L WM++RN ++FL+K+   K+ +S EPNN+   +SFRYNGLIH+K VGV    D K
Sbjct: 1   MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query: 321 GFTVVYKKAKXTRKPAKNLIRRPFKAGARRSLYKVKRLLKXNHYRTDLCKXTLXRXSAIL 142
           G  VV K+    RKPA + +R      AR +L  ++ +++ N YR DL    + R SAIL
Sbjct: 59  GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118

Query: 141 RSQRPI 124
           RSQ+P+
Sbjct: 119 RSQKPV 124


>BC010182-1|AAH10182.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score =  120 bits (289), Expect = 4e-27
 Identities = 57/126 (45%), Positives = 81/126 (64%)
 Frame = -1

Query: 501 MSSSLNWMIIRNNNAFLVKKXNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 322
           MS+ L WM++RN ++FL+K+   K+ +S EPNN+   +SFRYNGLIH+K VGV    D K
Sbjct: 1   MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query: 321 GFTVVYKKAKXTRKPAKNLIRRPFKAGARRSLYKVKRLLKXNHYRTDLCKXTLXRXSAIL 142
           G  VV K+    RKPA + +R      AR +L  ++ +++ N YR DL    + R SAIL
Sbjct: 59  GVVVVIKRRSGQRKPATSYVRTTINRNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118

Query: 141 RSQRPI 124
           RSQ+P+
Sbjct: 119 RSQKPV 124


>BC010173-1|AAH10173.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score =  120 bits (289), Expect = 4e-27
 Identities = 57/126 (45%), Positives = 81/126 (64%)
 Frame = -1

Query: 501 MSSSLNWMIIRNNNAFLVKKXNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 322
           MS+ L WM++RN ++FL+K+   K+ +S EPNN+   +SFRYNGLIH+K VGV    D K
Sbjct: 1   MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query: 321 GFTVVYKKAKXTRKPAKNLIRRPFKAGARRSLYKVKRLLKXNHYRTDLCKXTLXRXSAIL 142
           G  VV K+    RKPA + +R      AR +L  ++ +++ N YR DL    + R SAIL
Sbjct: 59  GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118

Query: 141 RSQRPI 124
           RSQ+P+
Sbjct: 119 RSQKPV 124


>U14969-1|AAA85657.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score =  119 bits (286), Expect = 1e-26
 Identities = 56/126 (44%), Positives = 81/126 (64%)
 Frame = -1

Query: 501 MSSSLNWMIIRNNNAFLVKKXNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 322
           MS+ L WM++RN ++FL+K+   K+ +S EPNN+   +SFRYNGLIH+K VGV    D K
Sbjct: 1   MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query: 321 GFTVVYKKAKXTRKPAKNLIRRPFKAGARRSLYKVKRLLKXNHYRTDLCKXTLXRXSAIL 142
           G  VV K+    RKPA + +R      AR +L  ++ +++ N YR DL    + R SAIL
Sbjct: 59  GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118

Query: 141 RSQRPI 124
           R+Q+P+
Sbjct: 119 RTQKPV 124


>AB209627-1|BAD92864.1|   95|Homo sapiens ribosomal protein L28
           variant protein.
          Length = 95

 Score = 74.9 bits (176), Expect = 2e-13
 Identities = 35/68 (51%), Positives = 48/68 (70%)
 Frame = -1

Query: 501 MSSSLNWMIIRNNNAFLVKKXNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 322
           MS+ L WM++RN ++FL+K+   K+ +S EPNN+   +SFRYNGLIH+K VGV    D K
Sbjct: 9   MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 66

Query: 321 GFTVVYKK 298
           G  VV K+
Sbjct: 67  GVVVVIKR 74


>AB007179-1|BAA25838.1|   53|Homo sapiens ribosomal protein L28
           protein.
          Length = 53

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = -1

Query: 264 IRRPFKAGARRSLYKVKRLLKXNHYRTDLCKXTLXRXSAILRSQRPI 124
           +R      AR +L  ++ +++ N YR DL    + R SAILRSQ+P+
Sbjct: 4   VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 50


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,550,266
Number of Sequences: 237096
Number of extensions: 1644820
Number of successful extensions: 13564
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13558
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)