Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_P19
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 142 2e-35
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 142 2e-35
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 28 0.83
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 27 1.5
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 2.5
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 4.5
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 25 5.9
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 25 7.8
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 7.8
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 142 bits (345), Expect = 2e-35
Identities = 70/110 (63%), Positives = 81/110 (73%)
Frame = +2
Query: 68 RTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 247
RTKT EKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++
Sbjct: 5 RTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRG 64
Query: 248 QVRGISIKLQEXERERRDNYVPEVSALEHDIIEVXPDTKDMLKMLDFNNI 397
VRGIS KLQE ERER+D YVPEVS LE D I V DTKDMLK L +++I
Sbjct: 65 PVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 142 bits (344), Expect = 2e-35
Identities = 72/121 (59%), Positives = 86/121 (71%)
Frame = +2
Query: 68 RTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 247
RTKT EKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++
Sbjct: 5 RTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRG 64
Query: 248 QVRGISIKLQEXERERRDNYVPEVSALEHDIIEVXPDTKDMLKMLDFNNINGLQLTQPAT 427
VRGIS KLQE ERER+D YVPEVS LE D + V DTKDMLK L ++ I +++ PA
Sbjct: 65 PVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAP 123
Query: 428 Q 430
Q
Sbjct: 124 Q 124
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 0.83
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -2
Query: 409 LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWDIVVTPLTLLFL-KFDR-DSSHL 248
L+ NI+E +++ + +YF+ M + +FW I P +L KF + ++SHL
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQINTSHL 423
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 1.5
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -3
Query: 192 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 82
RG+V + AIS+ ++ F+ S++++ + + FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 373 QHILGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDRD 260
Q L VG+ DD+ +R+ ++ TP++ L DRD
Sbjct: 172 QTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 210 PAILFLRGLVGMIAISSHILLFVSK 136
P I LRGLV A H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 67 GHDPWLKLYSAAFDK 23
G D WLKL+ +AF K
Sbjct: 146 GDDTWLKLFPSAFSK 160
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 164 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 256
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 236 LRHSQVRGISIKLQEXERERRDNYVPEVSALEH 334
L++ + K Q+ ++R D + EVSA++H
Sbjct: 853 LKYKSLVSFMFKEQDANKKREDFHSGEVSAIQH 885
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,753,398
Number of Sequences: 5004
Number of extensions: 31659
Number of successful extensions: 80
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -