Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P19
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                            134   5e-32
10_07_0174 + 13815478-13815903                                        133   6e-32
06_01_0889 - 6807449-6809257                                           28   3.3  
03_02_0943 + 12598616-12598789,12599790-12601250                       28   4.4  
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424...    27   5.8  
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681...    27   7.7  

>03_01_0066 - 537729-538163
          Length = 144

 Score =  134 bits (323), Expect = 5e-32
 Identities = 66/118 (55%), Positives = 87/118 (73%)
 Frame = +2

Query: 68  RTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 247
           RTKTV        EKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++  
Sbjct: 5   RTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRG 64

Query: 248 QVRGISIKLQEXERERRDNYVPEVSALEHDIIEVXPDTKDMLKMLDFNNINGLQLTQP 421
            VRGIS+KLQE ERERR ++VP+ SALE D I V  +T DML  L   ++ G+ + QP
Sbjct: 65  PVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121


>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  133 bits (322), Expect = 6e-32
 Identities = 64/117 (54%), Positives = 85/117 (72%)
 Frame = +2

Query: 68  RTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 247
           RTKTV        EKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++  
Sbjct: 5   RTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRG 64

Query: 248 QVRGISIKLQEXERERRDNYVPEVSALEHDIIEVXPDTKDMLKMLDFNNINGLQLTQ 418
            VRGIS+KLQE ERERR ++VPE SALE + I V  +T +ML  L   ++ G++  Q
Sbjct: 65  PVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQ 121


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 236 LRHSQVRGI-SIKLQEXERERRDNYVPEVSALEHDIIE 346
           LRH Q R I ++ +    R R + YVP+     HD+ E
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAE 524


>03_02_0943 + 12598616-12598789,12599790-12601250
          Length = 544

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +2

Query: 206 AGFATHLMRRLRHSQVRGISIKLQEXERERRDNYVPEVSALEHDIIEVXPDTKDMLKMLD 385
           A +++HL+RR+        + K Q  E ++  +   + + LEHD+I    +T D+LK L+
Sbjct: 41  AAWSSHLIRRMFAPP----NPKEQSEESKQPVDIKEQAAQLEHDLIIKEKETLDVLKELE 96


>04_04_1574 -
           34536744-34537136,34541247-34541405,34541497-34542411,
           34543642-34543731,34544324-34544390,34544483-34544676,
           34544770-34545510,34545596-34545661,34545783-34545908,
           34545978-34546073,34546153-34546521,34546602-34546724,
           34546802-34546906,34547394-34547531,34547665-34547760,
           34548018-34548275
          Length = 1311

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 237 SDTRKCEESLSNFRXRSVRGVTTMSQKCLLSNMTSSKXTPTPRI 368
           +DTR C  SL+NF     R ++T  QK   + M      P+  +
Sbjct: 450 ADTRDCSPSLANFFGAPKRILSTSKQKLGATRMVRLSSQPSSSV 493


>11_04_0376 -
           16965504-16966101,16966212-16966416,16967175-16968197,
           16968241-16968892,16969025-16969387,16970095-16970451
          Length = 1065

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 358 VGVYFDDVMFESRHFWDIVVTPL 290
           V + FDDV  E   +W++++TP+
Sbjct: 252 VFLVFDDVWNERSDYWELLITPM 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,995,328
Number of Sequences: 37544
Number of extensions: 189379
Number of successful extensions: 462
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)