Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P19
         (473 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)                        29   1.5  
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)                   28   3.4  
SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)                   27   6.0  
SB_32182| Best HMM Match : Ribosomal_L14 (HMM E-Value=3)               27   7.9  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_11022| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)
          Length = 1220

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -3

Query: 240 LRRLIKCVANPAILFLRGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFLTVLVRDT 61
           L  L+ C+ N   +F    + + AI  ++ + +SK+ V+ V     +  A FLT+L    
Sbjct: 568 LELLLSCLQNAGPVFCNHEMFITAIKQYLCVALSKNGVSSVPSVFELSLAIFLTLLSSFK 627

Query: 60  TH 55
           TH
Sbjct: 628 TH 629


>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
          Length = 996

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 397 NIVEVQHLQHILGVGVYFDDVMFESRHF--WDIVVTP 293
           N+   ++ +H++  G    D M E++HF  W++V  P
Sbjct: 361 NLGSSRNYKHLMDAGGILSDKMHENKHFHSWNVVYVP 397


>SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)
          Length = 249

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 203 IAGFATHLMRRLRHSQVRGISIKLQE--XERERRDNYVPEVSALEHDIIEVXPDTKDML 373
           I   + ++MR+ R +  R ++ +LQE   E++R+D    E++ L    I +    KD L
Sbjct: 44  IRNLSRNIMRKWREAHERKVNKRLQELRIEKKRKDGEAKEIARLVTRKIPLDVLAKDWL 102


>SB_32182| Best HMM Match : Ribosomal_L14 (HMM E-Value=3)
          Length = 294

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 177 FLPSLLGIKLLDLPHI**GVSDTRKCEESLSN--FRXRSVRGVTTMSQKCLLSNMTSSKX 350
           F+PS L  ++L L H   G     KC++ L +  +     +GV +M + C L  + SS  
Sbjct: 153 FIPSDLRDRVLKLAHE--GHQGIVKCKQRLRSKVWWLGMDKGVESMCKSCELCQLVSSYD 210

Query: 351 TPTP 362
            P P
Sbjct: 211 PPVP 214


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 113 YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 202
           YY++LT D+D+ K    EI I+P+ P+  K
Sbjct: 14  YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42


>SB_11022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 288 VRGVTTMSQKCLLSNMTSSKXTPTPRIC 371
           +R  T  S +CL  N  S K +P P +C
Sbjct: 70  IRDSTDNSGQCLFENSGSRKASPLPLLC 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,964,720
Number of Sequences: 59808
Number of extensions: 222453
Number of successful extensions: 490
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)