Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P19
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   138   1e-33
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    31   0.56 
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    28   3.9  
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    27   5.2  
Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  138 bits (335), Expect = 1e-33
 Identities = 68/111 (61%), Positives = 80/111 (72%), Gaps = 3/111 (2%)
 Frame = +2

Query: 68  RTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 247
           RTKTV        EKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+   
Sbjct: 5   RTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERG 64

Query: 248 QVRGISIKLQEXERERRDNYVPEVSALEHD---IIEVXPDTKDMLKMLDFN 391
            VRGISIKLQE ERERRDNY+PE+S ++      I+V  DT DMLK   FN
Sbjct: 65  PVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 186 SLLGIKLLDLPHI**GVSDT--RKCEESLSNFRXRSVRGVTTMSQKCL 323
           SL GI++  L     G S+T  RKCEE L +F    V+G+T  ++ C+
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 204 LLDLPHI**GVSDTRKCEESLSNFRXRSVRGVTTMSQKCLLSNMTSS 344
           +L L H+      TRKCEE L +F  + ++    +++K  L N+  S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 208 WICHTFNEASQTLASARNLYQTSGXGA 288
           W CH FN A   ++ A+ L Q     A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176


>Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.5 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 359 TKDMLKMLDFNNINGLQL 412
           T D+ KML+ NN+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,576,431
Number of Sequences: 27780
Number of extensions: 172191
Number of successful extensions: 471
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)