Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P16
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   150   9e-38
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   150   9e-38
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   5.9  
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom...    25   7.8  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   7.8  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   7.8  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  150 bits (364), Expect = 9e-38
 Identities = 70/98 (71%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
 Frame = +2

Query: 158 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN- 334
           VIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+NKCGVISPRF+V + DIE+W N 
Sbjct: 33  VIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQ 92

Query: 335 LLPSRQFGYLVLTTSGGIMDHEXARRKHLGGKILGFFF 448
           LLPSRQ G +VLTTS GIM H  AR K  GGKILGFF+
Sbjct: 93  LLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130



 Score = 44.4 bits (100), Expect = 9e-06
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = +1

Query: 61  MVRMNVLSDALKSIHNAEKRGKRQVLIRP 147
           MVR +VL+D L +I NAE+RG+RQVLIRP
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRP 29


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  150 bits (364), Expect = 9e-38
 Identities = 70/98 (71%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
 Frame = +2

Query: 158 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN- 334
           VIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+NKCGVISPRF+V + DIE+W N 
Sbjct: 33  VIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQ 92

Query: 335 LLPSRQFGYLVLTTSGGIMDHEXARRKHLGGKILGFFF 448
           LLPSRQ G +VLTTS GIM H  AR K  GGKILGFF+
Sbjct: 93  LLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130



 Score = 44.4 bits (100), Expect = 9e-06
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = +1

Query: 61  MVRMNVLSDALKSIHNAEKRGKRQVLIRP 147
           MVR +VL+D L +I NAE+RG+RQVLIRP
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRP 29


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = +3

Query: 18  CQLRFATKREL-NLSHGAYERI 80
           C+LRFATK++L N  + A+E+I
Sbjct: 151 CELRFATKQKLQNHVNRAHEKI 172


>SPBC4F6.15c |swi10|rad23|DNA repair
           endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 357 PNCREGSRLVHLSISLMGTSKRGEMTPHLFSLPVRFTTILP 235
           P  ++ SR+   SI +    K   + PH+ ++P  +T I+P
Sbjct: 30  PTPQKVSRVTAHSILVNPRQKGNPLLPHVRNVPWEYTDIVP 70


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 353 FGYLVLTTSGGIMDHEXARRKHLGGKIL 436
           FGY+V+TT+    +   A  K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 342 PHDSLVT*SLQQVVASWTMXKPEENTLEEK 431
           P+ S +T SL Q +  W + +PE     EK
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPESMLDAEK 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,361
Number of Sequences: 5004
Number of extensions: 32035
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)