Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P15
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   148   5e-37
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   147   7e-37
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    28   0.83 
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   1.5  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.9  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   1.9  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   2.5  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   4.5  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   5.9  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   7.8  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   7.8  
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce...    25   7.8  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   7.8  

>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  148 bits (358), Expect = 5e-37
 Identities = 72/110 (65%), Positives = 83/110 (75%)
 Frame = +3

Query: 69  RTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 248
           RTKT         EKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++  
Sbjct: 5   RTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRG 64

Query: 249 QVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 398
            VRGIS KLQEEERER+D YVPEVS LE D I VD DTKDMLK L +++I
Sbjct: 65  PVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  147 bits (357), Expect = 7e-37
 Identities = 74/121 (61%), Positives = 88/121 (72%)
 Frame = +3

Query: 69  RTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHS 248
           RTKT         EKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++  
Sbjct: 5   RTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRG 64

Query: 249 QVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPAT 428
            VRGIS KLQEEERER+D YVPEVS LE D + VD DTKDMLK L ++ I  +++  PA 
Sbjct: 65  PVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAP 123

Query: 429 Q 431
           Q
Sbjct: 124 Q 124


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -2

Query: 410 LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWDIVVTPLTLLFL-KFDR-DSSHL 249
           L+  NI+E +++  +    +YF+  M  + +FW I   P  +L   KF + ++SHL
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQINTSHL 423


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -3

Query: 193 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 83
           RG+V + AIS+ ++ F+   S++++ +  +  FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 246 SQVRGISIKLQEEERERRDNYVPEV 320
           S V  ISIK QEEER+R+     E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 231 RRLRHSQVRGISIKLQEEERERRDNYVPEVS 323
           R+   S+ R  S KL EEER+RR  +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 374 QHILGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDRD 261
           Q  L VG+  DD+   +R+   ++ TP++ L    DRD
Sbjct: 172 QTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 211 PAILFLRGLVGMIAISSHILLFVSK 137
           P I  LRGLV   A   H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 68  GHDPWLKLYSAAFDK 24
           G D WLKL+ +AF K
Sbjct: 146 GDDTWLKLFPSAFSK 160


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 165 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 257
           EIA++ TKP  + I G       RL  S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 291 ERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 407
           +R D    E + ++ +   +DPD KD+  +++ N  N +
Sbjct: 303 DRFDKVEEEYTPIKDERELIDPDQKDVFDLVNDNQFNDI 341


>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = +3

Query: 270 KLQEEERERRDNYVPEVSALEHDIIEVD 353
           + + +E+ RRD     +  L+H+I+ ++
Sbjct: 102 RARRKEKNRRDEVAEAILGLQHEIVRIN 129


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 237 LRHSQVRGISIKLQEEERERRDNYVPEVSALEH 335
           L++  +     K Q+  ++R D +  EVSA++H
Sbjct: 853 LKYKSLVSFMFKEQDANKKREDFHSGEVSAIQH 885


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,623
Number of Sequences: 5004
Number of extensions: 33050
Number of successful extensions: 101
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)