Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P14
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    26   5.5  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.5  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   9.5  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   9.5  

>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 297 HT*VSSFQSDNLYSLIFLPFSAFN-FLPNFRLNLP 398
           H   +   + N Y++ F P+S FN F+P+F   +P
Sbjct: 37  HPLANRIVNPNYYNMGFNPYSGFNSFIPSFNPFVP 71


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 312 NSLRYAIRPIFRSPIFTTPCSFNVVN 235
           N++R A RP  + P+F +   F+V+N
Sbjct: 154 NNVRNAERPASKKPVFGSKKYFDVIN 179


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 324 LIGTNSLRYAIRPIFRSPIFTTPCSFNVVNSKTSV 220
           L G +   Y  RP+F    F  PC+ N  ++ TSV
Sbjct: 681 LKGASRYPYFPRPMFTEFDFRIPCNTNNPDASTSV 715


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 40  LSCFTFFINLPNTTVHSFI 96
           LS F   +NLPN   HSFI
Sbjct: 377 LSLFMKTLNLPNIRAHSFI 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,208
Number of Sequences: 5004
Number of extensions: 48814
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)