Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P14
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56052| Best HMM Match : Mpv17_PMP22 (HMM E-Value=2.7)               29   4.4  
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)                    28   7.6  
SB_49876| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_10746| Best HMM Match : Cadherin (HMM E-Value=0)                    28   7.6  

>SB_56052| Best HMM Match : Mpv17_PMP22 (HMM E-Value=2.7)
          Length = 215

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 83  STLLFYTSPVYPRAVRNMVLYFCQLKTH-RNKTCTTNCR 196
           ST++ YT PV        +LYF + K   R+ TC   C+
Sbjct: 96  STVVQYTKPVDDEMANGSILYFVKYKKPCRSSTCEVVCQ 134


>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1021

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 64  NLPNTTVHSFILYITGLPQSSSKHGPLLLSA*NSPE*NLYNKLSALVGHLKTN 222
           N PN T   ++L +T + Q   K+G ++     SPE  L+ ++    G + TN
Sbjct: 252 NAPNGT---YLLRVTAIDQDIGKNGEIMFYLDESPERGLF-RMDEYTGEIWTN 300


>SB_49876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 28  HLLALSCFTFFINLPNTTVHSFILYITGLPQSSSKHGPL 144
           H+LA+ CF   +     T+ SF+ Y  GLP       PL
Sbjct: 503 HVLAMECFDD-VKDEGGTIKSFLSYCGGLPAPEHADNPL 540


>SB_10746| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 336

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 64  NLPNTTVHSFILYITGLPQSSSKHGPLLLSA*NSPE*NLYNKLSALVGHLKTN 222
           N PN T   ++L +T + Q   K+G ++     SPE  L+ ++    G + TN
Sbjct: 252 NAPNGT---YLLRVTAIDQDIGKNGEIMFYLDESPERGLF-RMDEYTGEIWTN 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,346,615
Number of Sequences: 59808
Number of extensions: 327156
Number of successful extensions: 1222
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)