Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P13
         (430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.94 
SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                28   2.9  
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)                    27   5.0  
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1)                      27   6.6  
SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)                      27   8.7  

>SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 282 GEEFXEDRADGAKVKSVCTFEGNTLK 359
           G+E  +D  DG+K  S CTFEG T++
Sbjct: 25  GDEHEKDLRDGSKRISGCTFEGITMQ 50


>SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 175 KPPTLSPRPWSSVRMVTNTI 234
           KP  L P PW  VR+ TN I
Sbjct: 56  KPNPLGPEPWYKVRLPTNVI 75


>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 854

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 175 KPPTLSPRPWSSVRMVTNTI 234
           KP  L P PW  VR+ TN I
Sbjct: 81  KPNPLGPEPWYKVRLPTNVI 100


>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 2726

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 328 PYAHSKATPSSKSRRPPTVLKSL--TSGXSAPD 420
           PY+ +  TPSS  R+PP    S   TS  S+P+
Sbjct: 745 PYSENSPTPSSSERQPPLSPSSSDNTSVSSSPE 777


>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 235 KLYSSPSLRSSTVGVTALAALRVIRPTPMV 146
           +L+ SP+LRS  +G+   +AL+ + P  MV
Sbjct: 13  RLFHSPNLRSDAIGIFR-SALKAVTPQEMV 41


>SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1)
          Length = 1156

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 20/78 (25%), Positives = 30/78 (38%)
 Frame = +3

Query: 159 GLITRKAANAVTPTVELRKDGDEYNLVXXXXXXXXXXXXXPGEEFXEDRADGAKVKSVCT 338
           GL+   A+  V+ T+  R+ GD  +                G E      DG     VC 
Sbjct: 322 GLVKGSASRRVSNTLHTRRQGDARDPTSSWPPSWIRVTEDEGAE------DGGHELRVCV 375

Query: 339 FEGNTLKQVQKAPDGLEV 392
           FEG + ++    P  +EV
Sbjct: 376 FEGFSRQKQHLKPTAMEV 393


>SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)
          Length = 800

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 203 HGRGDSVGGFAGDQTHADG 147
           HG GD  GG  GD  H DG
Sbjct: 390 HGGGDHGGGDYGDGDHGDG 408


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,743,165
Number of Sequences: 59808
Number of extensions: 200654
Number of successful extensions: 478
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)