Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P13
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding...    66   1e-11
Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical pr...    65   2e-11
AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding...    59   1e-09
Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical pr...    53   1e-07
AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding...    50   9e-07
AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding...    50   9e-07
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    29   1.1  
AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical...    27   4.3  
Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AC084156-4|AAK68488.2|  251|Caenorhabditis elegans Transforming ...    27   7.5  

>AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding
           protein protein 6 protein.
          Length = 135

 Score = 65.7 bits (153), Expect = 1e-11
 Identities = 34/82 (41%), Positives = 45/82 (54%)
 Frame = +3

Query: 126 NFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVXXXXXXXXXXXXXPGEEFXEDR 305
           NF+E+MK +GVGLITRKAA  + PT+E++ +GD +                 G+EF E  
Sbjct: 16  NFEEYMKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFKNTTLSFKLGQEFDETT 75

Query: 306 ADGAKVKSVCTFEGNTLKQVQK 371
            DG  VKSV  FE      +QK
Sbjct: 76  PDGRTVKSVVNFENGKFIHIQK 97


>Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.2 protein.
          Length = 137

 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 35/81 (43%), Positives = 43/81 (53%)
 Frame = +3

Query: 126 NFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVXXXXXXXXXXXXXPGEEFXEDR 305
           NFDE+MK IGVGLITRKAA  + P +E+R DG+ +N                GEEF E+ 
Sbjct: 18  NFDEYMKEIGVGLITRKAAAHLKPILEIRLDGETWNFDQFSTFKNTKLSFKLGEEFVENS 77

Query: 306 ADGAKVKSVCTFEGNTLKQVQ 368
            D     S+ TFE   L   Q
Sbjct: 78  PDDRTYNSLFTFENGKLTHRQ 98


>AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding
           protein protein 5 protein.
          Length = 136

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 29/82 (35%), Positives = 46/82 (56%)
 Frame = +3

Query: 126 NFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVXXXXXXXXXXXXXPGEEFXEDR 305
           NF++++K +GVGL+ RKAA A  PT+E++ +G+++++               G EF E  
Sbjct: 17  NFEDYLKEVGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTTLEFTLGVEFDETT 76

Query: 306 ADGAKVKSVCTFEGNTLKQVQK 371
            DG + KS  T E   +  VQK
Sbjct: 77  PDGRQFKSTITIEDGKVVHVQK 98


>Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.6 protein.
          Length = 137

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 26/73 (35%), Positives = 40/73 (54%)
 Frame = +3

Query: 126 NFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVXXXXXXXXXXXXXPGEEFXEDR 305
           NF+E++K IGVGL+ RKAA+  +PT+E++ DGD ++                 E+F E  
Sbjct: 18  NFEEYLKEIGVGLLIRKAASLTSPTLEIKLDGDTWHFNQYSTFKNNKLAFKIREKFVEIA 77

Query: 306 ADGAKVKSVCTFE 344
            D     ++ TFE
Sbjct: 78  PDERSYNTLVTFE 90


>AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform b protein.
          Length = 137

 Score = 49.6 bits (113), Expect = 9e-07
 Identities = 27/86 (31%), Positives = 38/86 (44%)
 Frame = +3

Query: 126 NFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVXXXXXXXXXXXXXPGEEFXEDR 305
           NFDE++K +GVG   R  A    P +E   +GDE+ +               G    E  
Sbjct: 18  NFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFKNYTLKWKLGTASDEKT 77

Query: 306 ADGAKVKSVCTFEGNTLKQVQKAPDG 383
           ADG  V SV + E + L Q++    G
Sbjct: 78  ADGRDVSSVFSIENDHLVQIETGKGG 103


>AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform a protein.
          Length = 152

 Score = 49.6 bits (113), Expect = 9e-07
 Identities = 27/86 (31%), Positives = 38/86 (44%)
 Frame = +3

Query: 126 NFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVXXXXXXXXXXXXXPGEEFXEDR 305
           NFDE++K +GVG   R  A    P +E   +GDE+ +               G    E  
Sbjct: 33  NFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFKNYTLKWKLGTASDEKT 92

Query: 306 ADGAKVKSVCTFEGNTLKQVQKAPDG 383
           ADG  V SV + E + L Q++    G
Sbjct: 93  ADGRDVSSVFSIENDHLVQIETGKGG 118


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex
            protein protein7 protein.
          Length = 1217

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 271  FXSVVLKVEEVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKXC-GGS 113
            F S++ K   VT    S +L SST    + +A+  I PT  +F NSS    GGS
Sbjct: 845  FGSILDKETHVTTTPVSVALPSSTDSTQSKSAIPTIAPTMSLFGNSSTGSFGGS 898


>AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical
           protein F16B4.11 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 150 IGVGLITRKAANAVTPTVELRKDGDEYNL 236
           + + L+  KA N +   V +RKDGD  NL
Sbjct: 166 VDISLLVDKATNYILNPVLIRKDGDMSNL 194


>Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical
           protein K05D4.3 protein.
          Length = 321

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 256 LKVEEVTKLYSSPSLRSSTVGVTALAALRV 167
           LK   V KL+  P  +SS VGV A   +R+
Sbjct: 286 LKSRNVFKLFCCPFSKSSQVGVVAQPVMRI 315


>AC084156-4|AAK68488.2|  251|Caenorhabditis elegans Transforming
           growth factor betafamily protein 3 protein.
          Length = 251

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = -1

Query: 256 LKVEEVTKLYSSPSLRSSTVGVTALAALRVIRPTP----MVFMNSSKXCGGSHRCISCLR 89
           +K +   K+       S+T  V  + AL V+R  P    MVF  ++   G S  C+ C  
Sbjct: 105 MKQKSSDKMIKIEITNSNTQNV--INALSVLRNAPNFDVMVFQPNTVTAGTSD-CVGCCV 161

Query: 88  IPFL*INFIDL 56
           IPF  +NF ++
Sbjct: 162 IPFY-VNFTEI 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,530,053
Number of Sequences: 27780
Number of extensions: 148726
Number of successful extensions: 398
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)