Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_P10
(353 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P51425 Cluster: 60S ribosomal protein L39; n=9; Poaceae... 56 1e-07
UniRef50_Q4N5K7 Cluster: 60S ribosomal protein L39, putative; n=... 54 7e-07
UniRef50_A0DH83 Cluster: Chromosome undetermined scaffold_50, wh... 54 9e-07
UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, wh... 54 9e-07
UniRef50_A0BVU9 Cluster: Chromosome undetermined scaffold_130, w... 54 9e-07
UniRef50_Q96EH5 Cluster: 60S ribosomal protein L39-like; n=113; ... 50 1e-05
UniRef50_UPI0001509BE0 Cluster: hypothetical protein TTHERM_0052... 45 3e-04
UniRef50_UPI00006CB3D9 Cluster: Ribosomal L39 protein; n=1; Tetr... 45 3e-04
UniRef50_P13005 Cluster: 50S ribosomal protein L39e; n=10; Archa... 37 0.11
UniRef50_Q01CG7 Cluster: Chromosome 03 contig 1, DNA sequence; n... 34 0.61
UniRef50_Q8YDQ0 Cluster: ALDEHYDE DEHYDROGENASE; n=1; Brucella m... 33 1.9
UniRef50_Q8SQP8 Cluster: 60S ribosomal protein L39; n=1; Encepha... 33 1.9
UniRef50_A7D3F5 Cluster: Ribosomal protein L39e; n=1; Halorubrum... 32 3.2
UniRef50_Q4SBY5 Cluster: Chromosome 2 SCAF14661, whole genome sh... 31 4.3
UniRef50_UPI00015BAD96 Cluster: LSU ribosomal protein L39E; n=1;... 31 5.7
UniRef50_A0RW53 Cluster: Ribosomal protein L39; n=2; Thermoprote... 31 7.5
UniRef50_UPI0000D99F63 Cluster: PREDICTED: similar to 60S riboso... 30 9.9
UniRef50_A0QZK6 Cluster: Major facilitator superfamily protein; ... 30 9.9
>UniRef50_P51425 Cluster: 60S ribosomal protein L39; n=9;
Poaceae|Rep: 60S ribosomal protein L39 - Zea mays
(Maize)
Length = 51
Score = 56.4 bits (130), Expect = 1e-07
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +2
Query: 98 PFLSWVRMRTGNTIRYNAKRRHWRRTKL 181
P W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 22 PIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>UniRef50_Q4N5K7 Cluster: 60S ribosomal protein L39, putative; n=1;
Theileria parva|Rep: 60S ribosomal protein L39, putative
- Theileria parva
Length = 79
Score = 54.0 bits (124), Expect = 7e-07
Identities = 25/58 (43%), Positives = 34/58 (58%)
Frame = +2
Query: 14 DNLIVQNVGP*DVYY*RANWPKS*NKTDPFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 187
DN + +G + + K + P W R++TGN IRYNAKRR+WRRTKLK+
Sbjct: 22 DNFKLYTIGSVRTLTLKKHLGKKMKQNRPIPHWFRLKTGNKIRYNAKRRYWRRTKLKV 79
>UniRef50_A0DH83 Cluster: Chromosome undetermined scaffold_50, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_50,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 93
Score = 53.6 bits (123), Expect = 9e-07
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +2
Query: 77 KS*NKTDPFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 187
K+ + P +W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 56 KANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 92
>UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_38,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 131
Score = 53.6 bits (123), Expect = 9e-07
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +2
Query: 77 KS*NKTDPFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 187
K+ + P +W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 94 KANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 130
>UniRef50_A0BVU9 Cluster: Chromosome undetermined scaffold_130,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_130,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 137
Score = 53.6 bits (123), Expect = 9e-07
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +2
Query: 77 KS*NKTDPFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 187
K+ + P +W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 100 KANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 136
>UniRef50_Q96EH5 Cluster: 60S ribosomal protein L39-like; n=113;
Eukaryota|Rep: 60S ribosomal protein L39-like - Homo
sapiens (Human)
Length = 51
Score = 50.0 bits (114), Expect = 1e-05
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2
Query: 98 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 187
P W++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>UniRef50_UPI0001509BE0 Cluster: hypothetical protein
TTHERM_00526400; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00526400 - Tetrahymena
thermophila SB210
Length = 121
Score = 45.2 bits (102), Expect = 3e-04
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +2
Query: 98 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 187
P +W R ++ IRYN+KRR+WRRTKLK+
Sbjct: 91 PLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 120
>UniRef50_UPI00006CB3D9 Cluster: Ribosomal L39 protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal L39 protein
- Tetrahymena thermophila SB210
Length = 89
Score = 45.2 bits (102), Expect = 3e-04
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +2
Query: 98 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 187
P +W R ++ IRYN+KRR+WRRTKLK+
Sbjct: 59 PLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 88
>UniRef50_P13005 Cluster: 50S ribosomal protein L39e; n=10;
Archaea|Rep: 50S ribosomal protein L39e - Sulfolobus
acidocaldarius
Length = 51
Score = 36.7 bits (81), Expect = 0.11
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 77 KS*NKTDPFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 187
K+ + P +WV ++T IR+N RR+WRR LK+
Sbjct: 15 KALKRNSPIPAWVIIKTQAEIRFNPLRRNWRRNNLKV 51
>UniRef50_Q01CG7 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 567
Score = 34.3 bits (75), Expect = 0.61
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 143 YNAKRRHWRRTKL 181
YNAKRRHWRRTKL
Sbjct: 4 YNAKRRHWRRTKL 16
>UniRef50_Q8YDQ0 Cluster: ALDEHYDE DEHYDROGENASE; n=1; Brucella
melitensis|Rep: ALDEHYDE DEHYDROGENASE - Brucella
melitensis
Length = 340
Score = 32.7 bits (71), Expect = 1.9
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 181 ELCPSPVTPLSVISNSVSCAHPYPAEEWVCF-VSAFWP 71
ELC P V+ N V+ P PA W C +S FWP
Sbjct: 201 ELCAEAGLPEGVL-NVVTAPGPLPARRWGCIPISTFWP 237
>UniRef50_Q8SQP8 Cluster: 60S ribosomal protein L39; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L39
- Encephalitozoon cuniculi
Length = 52
Score = 32.7 bits (71), Expect = 1.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 107 SWVRMRTGNTIRYNAKRRHWRRTKLKL 187
+W RM + YN RRHWR KLK+
Sbjct: 25 AWKRMMKEHKGEYNRARRHWRSKKLKI 51
>UniRef50_A7D3F5 Cluster: Ribosomal protein L39e; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L39e -
Halorubrum lacusprofundi ATCC 49239
Length = 64
Score = 31.9 bits (69), Expect = 3.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 107 SWVRMRTGNTIRYNAKRRHWRRTKL 181
+WV M+T + N KRR+WRR L
Sbjct: 38 AWVMMKTDMNVTRNPKRRNWRRNDL 62
>UniRef50_Q4SBY5 Cluster: Chromosome 2 SCAF14661, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 2 SCAF14661, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 1455
Score = 31.5 bits (68), Expect = 4.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 178 LCPSPVTPLSVISNSVSCAHPYPAEEWVCFVSAFWPIC 65
LC S PL+V + SV C H P EW + + + C
Sbjct: 352 LCVSEEPPLAVQNCSVPCKHQCPVSEWSSWSACLFDNC 389
>UniRef50_UPI00015BAD96 Cluster: LSU ribosomal protein L39E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L39E - Ignicoccus hospitalis KIN4/I
Length = 55
Score = 31.1 bits (67), Expect = 5.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 107 SWVRMRTGNTIRYNAKRRHWRRTKLK 184
+WV ++T + N RR+WRR K+K
Sbjct: 28 AWVILKTRRRVTRNPMRRYWRRQKIK 53
>UniRef50_A0RW53 Cluster: Ribosomal protein L39; n=2;
Thermoprotei|Rep: Ribosomal protein L39 - Cenarchaeum
symbiosum
Length = 52
Score = 30.7 bits (66), Expect = 7.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 98 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 187
P +W+ ++T +R N KRR WR T +++
Sbjct: 22 PVPAWIILKTRRGVRTNPKRRAWRSTDVEV 51
>UniRef50_UPI0000D99F63 Cluster: PREDICTED: similar to 60S ribosomal
protein L39; n=2; Catarrhini|Rep: PREDICTED: similar to
60S ribosomal protein L39 - Macaca mulatta
Length = 102
Score = 30.3 bits (65), Expect = 9.9
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 98 PFLSWVRMRTGNTIRYNAK 154
P W++M+TG+ IRYN+K
Sbjct: 22 PIPQWIQMKTGDKIRYNSK 40
>UniRef50_A0QZK6 Cluster: Major facilitator superfamily protein;
n=1; Mycobacterium smegmatis str. MC2 155|Rep: Major
facilitator superfamily protein - Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155)
Length = 439
Score = 30.3 bits (65), Expect = 9.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 160 TPLSVISNSVSCAHPYPAEEWVCFVSAFWPICALII 53
TP+ V + S H +PA W+ ++A +C L++
Sbjct: 380 TPMIVTAMVASAGHSWPAPAWLALLAAVSLLCVLVL 415
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,257,627
Number of Sequences: 1657284
Number of extensions: 3493203
Number of successful extensions: 8334
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8332
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11514999177
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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