Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P10
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    56   2e-09
SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   1.5  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    26   1.5  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    26   1.5  
SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   2.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   4.5  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    24   6.0  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    24   7.9  

>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 55.6 bits (128), Expect = 2e-09
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +2

Query: 77  KS*NKTDPFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 187
           K+  +  P   W+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 15  KAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51


>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -2

Query: 199 FTSLQLELCPSPVTPLSVISNSVSCAHP-YPAEEWVCFVSAFWPICALIINVLWADILNN 23
           F +++ +     V  +++I+ S+  ++  YP  + +  ++A +  C LI +++W D L N
Sbjct: 13  FKNIKQQKSQVSVVDVTMINISLYKSYKSYPTNKVLSELAALFESCNLIFDLIWFDDLQN 72


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 199 FTSLQLELCPSPVTPLSVISNSVSCAHPYP 110
           ++S+ L    +P TP S  +N V CA P P
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSP 361


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 172 PSPVTPLSVISNSVSCAHPYPAEEWVCFVS 83
           P+P +P SVISN  S        EW    S
Sbjct: 366 PAPYSPTSVISNHSSTGKSLVISEWAYLAS 395


>SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 177 FVLLQ*RLLALYRIVFPVRILTQLRNGSVLFQLFGQFAR 61
           FV    RL +LY IV   + L  LRNG    +L+  + R
Sbjct: 52  FVYCSMRLFSLYTIVQYFKSLRCLRNGRTEVRLYTHYKR 90


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 169  SPVTPLSVISNSVSCAHPY 113
            +P TP++V S++V+ AH Y
Sbjct: 982  NPYTPIAVASSTVNPAHTY 1000


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 106 EEWVCFVSAFWPICALIINVLWADILNNQVV 14
           E W     A   + + +IN  W   LN Q+V
Sbjct: 22  EYWPSVAPAATELISKLINAFWCQTLNGQLV 52


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 231 YRVFITLHLTHSQAYNLSFVLLQ*RLLALYRIV 133
           YRVFI LHL    A   +FVL +  L  +Y I+
Sbjct: 236 YRVFIELHLNEEIA--AAFVLQKPILPLIYNIL 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 927,716
Number of Sequences: 5004
Number of extensions: 15367
Number of successful extensions: 43
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)