Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P10
         (353 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_6868| Best HMM Match : DUF116 (HMM E-Value=0.65)                    26   7.7  

>SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 175 CPSPVTPLSVISNSVSCAH 119
           CPSP TP S  SNS S A+
Sbjct: 40  CPSPTTPPSSRSNSSSSAY 58


>SB_6868| Best HMM Match : DUF116 (HMM E-Value=0.65)
          Length = 246

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 62  RANWPKS*NKTDPFLSWVRMRTGNTIRYNAKRRHWRRTKL 181
           +A WP      D  + WV++    +   N +RR   R +L
Sbjct: 142 KAEWPTKQEVVDTLMDWVQLLANASRELNIRRREALRYEL 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,974,371
Number of Sequences: 59808
Number of extensions: 114063
Number of successful extensions: 225
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)