Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P10
         (353 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.4  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    20   7.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = -2

Query: 199 FTSLQLELCPSPVTPLSVISNSVSCAHPYPAEEWVCFVSAFWPICAL 59
           F  +   +  S V+ + +++     A  +   EWV  V  +W  C L
Sbjct: 298 FNCIMFMVASSVVSTILILNYHHRNADTHEMSEWVKVVFLYWLPCIL 344


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 140 RYNAKRRHWRRTK 178
           RY+  +R+WR+ K
Sbjct: 26  RYSKLKRNWRKPK 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,742
Number of Sequences: 438
Number of extensions: 1040
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)